Inference of population genetic parameters in metagenomics: A clean look at messy data

由 Johnson, Philip L.F., Slatkin, Montgomery
出版 2006

Inference of Microbial Recombination Rates from Metagenomic Data

由 Johnson, Philip L. F., Slatkin, Montgomery
出版 2009

Mutation Rate Distribution Inferred from Coincident SNPs and Coincident Substitutions

由 Johnson, Philip L. F., Hellmann, Ines
出版 2011

Network-Based Prediction of Novel CRISPR-Associated Genes in Metagenomes

由 Weissman, Jake L., Johnson, Philip L. F.
發表在 mSystems (2020)

A population biological approach to understanding the maintenance and loss of the T-cell repertoire during aging

由 Johnson, Philip L F, Goronzy, Jörg J, Antia, Rustom
出版 2014

Linking high GC content to the repair of double strand breaks in prokaryotic genomes

由 Weissman, JL, Fagan, William F., Johnson, Philip L. F.
發表在 PLoS Genet (2019)

Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors

由 Bulyk, Martha L., Johnson, Philip L. F., Church, George M.
出版 2002

Selective Maintenance of Multiple CRISPR Arrays Across Prokaryotes

由 Weissman, Jake L., Fagan, William F., Johnson, Philip L.F.
發表在 CRISPR J (2018)

How do antigenically varying pathogens avoid cross-reactive responses to invariant antigens?

由 Johnson, Philip L. F., Kochin, Beth F., Ahmed, Rafi, Antia, Rustom
出版 2012

Peripheral selection rather than thymic involution explains sudden contraction in naive CD4 T-cell diversity with age

由 Johnson, Philip L. F., Yates, Andrew J., Goronzy, Jörg J., Antia, Rustom
出版 2012

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

由 Jónsson, Hákon, Ginolhac, Aurélien, Schubert, Mikkel, Johnson, Philip L. F., Orlando, Ludovic
出版 2013

Visualization and prediction of CRISPR incidence in microbial trait-space to identify drivers of antiviral immune strategy

由 Weissman, JL, Laljani, Rohan M. R., Fagan, William F., Johnson, Philip L. F.
發表在 ISME J (2019)

Utility of R(0) as a predictor of disease invasion in structured populations

由 Cross, Paul C, Johnson, Philip L.F, Lloyd-Smith, James O, Getz, Wayne M
出版 2006

Selection influences naive CD8+ TCR‐β repertoire sharing

由 Yiu, Hao H., Schoettle, Louis N., Garcia‐Neuer, Marlene, Blattman, Joseph N., Johnson, Philip L. F.
發表在 Immunology (2021)

Immune loss as a driver of coexistence during host-phage coevolution

由 Weissman, JL, Holmes, Rayshawn, Barrangou, Rodolphe, Moineau, Sylvain, Fagan, William F, Levin, Bruce, Johnson, Philip L F
發表在 ISME J (2018)

Vaccination Alters the Balance between Protective Immunity, Exhaustion, Escape, and Death in Chronic Infections

由 Johnson, Philip L. F., Kochin, Beth F., McAfee, Megan S., Stromnes, Ingunn M., Regoes, Roland R., Ahmed, Rafi, Blattman, Joseph N., Antia, Rustom
出版 2011

Initial viral load determines the magnitude of the human CD8 T cell response to yellow fever vaccination

由 Akondy, Rama S., Johnson, Philip L. F., Nakaya, Helder I., Edupuganti, Srilatha, Mulligan, Mark J., Lawson, Benton, Miller, Joseph D., Pulendran, Bali, Antia, Rustom, Ahmed, Rafi
發表在 Proc Natl Acad Sci U S A (2015)

Patterns of damage in genomic DNA sequences from a Neandertal

由 Briggs, Adrian W., Stenzel, Udo, Johnson, Philip L. F., Green, Richard E., Kelso, Janet, Prüfer, Kay, Meyer, Matthias, Krause, Johannes, Ronan, Michael T., Lachmann, Michael, Pääbo, Svante
出版 2007

Biological Sexing of a 4000-Year-Old Egyptian Mummy Head to Assess the Potential of Nuclear DNA Recovery from the Most Damaged and Limited Forensic Specimens

由 Loreille, Odile, Ratnayake, Shashikala, Bazinet, Adam L., Stockwell, Timothy B., Sommer, Daniel D., Rohland, Nadin, Mallick, Swapan, Johnson, Philip L.F., Skoglund, Pontus, Onorato, Anthony J., Bergman, Nicholas H., Reich, David, Irwin, Jodi A.
發表在 Genes (Basel) (2018)

Exploring the functional composition of the human microbiome using a hand-curated microbial trait database

由 Weissman, Jake L., Dogra, Sonia, Javadi, Keyan, Bolten, Samantha, Flint, Rachel, Davati, Cyrus, Beattie, Jess, Dixit, Keshav, Peesay, Tejasvi, Awan, Shehar, Thielen, Peter, Breitwieser, Florian, Johnson, Philip L. F., Karig, David, Fagan, William F., Bewick, Sharon
發表在 BMC Bioinformatics (2021)