Inference of population genetic parameters in metagenomics: A clean look at messy data

por Johnson, Philip L.F., Slatkin, Montgomery
Publicado 2006

Inference of Microbial Recombination Rates from Metagenomic Data

por Johnson, Philip L. F., Slatkin, Montgomery
Publicado 2009

Mutation Rate Distribution Inferred from Coincident SNPs and Coincident Substitutions

por Johnson, Philip L. F., Hellmann, Ines
Publicado 2011

Network-Based Prediction of Novel CRISPR-Associated Genes in Metagenomes

por Weissman, Jake L., Johnson, Philip L. F.
Publicado en mSystems (2020)

A population biological approach to understanding the maintenance and loss of the T-cell repertoire during aging

por Johnson, Philip L F, Goronzy, Jörg J, Antia, Rustom
Publicado 2014

Linking high GC content to the repair of double strand breaks in prokaryotic genomes

por Weissman, JL, Fagan, William F., Johnson, Philip L. F.
Publicado en PLoS Genet (2019)

Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors

por Bulyk, Martha L., Johnson, Philip L. F., Church, George M.
Publicado 2002

Selective Maintenance of Multiple CRISPR Arrays Across Prokaryotes

por Weissman, Jake L., Fagan, William F., Johnson, Philip L.F.
Publicado en CRISPR J (2018)

How do antigenically varying pathogens avoid cross-reactive responses to invariant antigens?

por Johnson, Philip L. F., Kochin, Beth F., Ahmed, Rafi, Antia, Rustom
Publicado 2012

Peripheral selection rather than thymic involution explains sudden contraction in naive CD4 T-cell diversity with age

por Johnson, Philip L. F., Yates, Andrew J., Goronzy, Jörg J., Antia, Rustom
Publicado 2012

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

por Jónsson, Hákon, Ginolhac, Aurélien, Schubert, Mikkel, Johnson, Philip L. F., Orlando, Ludovic
Publicado 2013

Visualization and prediction of CRISPR incidence in microbial trait-space to identify drivers of antiviral immune strategy

por Weissman, JL, Laljani, Rohan M. R., Fagan, William F., Johnson, Philip L. F.
Publicado en ISME J (2019)

Utility of R(0) as a predictor of disease invasion in structured populations

por Cross, Paul C, Johnson, Philip L.F, Lloyd-Smith, James O, Getz, Wayne M
Publicado 2006

Selection influences naive CD8+ TCR‐β repertoire sharing

por Yiu, Hao H., Schoettle, Louis N., Garcia‐Neuer, Marlene, Blattman, Joseph N., Johnson, Philip L. F.
Publicado en Immunology (2021)

Immune loss as a driver of coexistence during host-phage coevolution

por Weissman, JL, Holmes, Rayshawn, Barrangou, Rodolphe, Moineau, Sylvain, Fagan, William F, Levin, Bruce, Johnson, Philip L F
Publicado en ISME J (2018)

Vaccination Alters the Balance between Protective Immunity, Exhaustion, Escape, and Death in Chronic Infections

por Johnson, Philip L. F., Kochin, Beth F., McAfee, Megan S., Stromnes, Ingunn M., Regoes, Roland R., Ahmed, Rafi, Blattman, Joseph N., Antia, Rustom
Publicado 2011

Initial viral load determines the magnitude of the human CD8 T cell response to yellow fever vaccination

por Akondy, Rama S., Johnson, Philip L. F., Nakaya, Helder I., Edupuganti, Srilatha, Mulligan, Mark J., Lawson, Benton, Miller, Joseph D., Pulendran, Bali, Antia, Rustom, Ahmed, Rafi
Publicado en Proc Natl Acad Sci U S A (2015)

Patterns of damage in genomic DNA sequences from a Neandertal

por Briggs, Adrian W., Stenzel, Udo, Johnson, Philip L. F., Green, Richard E., Kelso, Janet, Prüfer, Kay, Meyer, Matthias, Krause, Johannes, Ronan, Michael T., Lachmann, Michael, Pääbo, Svante
Publicado 2007

Biological Sexing of a 4000-Year-Old Egyptian Mummy Head to Assess the Potential of Nuclear DNA Recovery from the Most Damaged and Limited Forensic Specimens

por Loreille, Odile, Ratnayake, Shashikala, Bazinet, Adam L., Stockwell, Timothy B., Sommer, Daniel D., Rohland, Nadin, Mallick, Swapan, Johnson, Philip L.F., Skoglund, Pontus, Onorato, Anthony J., Bergman, Nicholas H., Reich, David, Irwin, Jodi A.
Publicado en Genes (Basel) (2018)

Exploring the functional composition of the human microbiome using a hand-curated microbial trait database

por Weissman, Jake L., Dogra, Sonia, Javadi, Keyan, Bolten, Samantha, Flint, Rachel, Davati, Cyrus, Beattie, Jess, Dixit, Keshav, Peesay, Tejasvi, Awan, Shehar, Thielen, Peter, Breitwieser, Florian, Johnson, Philip L. F., Karig, David, Fagan, William F., Bewick, Sharon
Publicado en BMC Bioinformatics (2021)