Phosphoproteomics-Based Profiling of Kinase Activities in Cancer Cells

by Wirbel, Jakob, Cutillas, Pedro, Saez-Rodriguez, Julio
Published in Methods Mol Biol (2017)

Red Blood Cells Preconditioned with Hemin Are Less Permissive to Plasmodium Invasion In Vivo and In Vitro

by Gaudreault, Véronique, Wirbel, Jakob, Jardim, Armando, Rohrbach, Petra, Scorza, Tatiana
Published in PLoS One (2015)

Metabolic models predict bacterial passengers in colorectal cancer

by Garza, Daniel R., Taddese, Rahwa, Wirbel, Jakob, Zeller, Georg, Boleij, Annemarie, Huynen, Martijn A., Dutilh, Bas E.
Published in Cancer Metab (2020)

Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine learning toolbox

by Wirbel, Jakob, Zych, Konrad, Essex, Morgan, Karcher, Nicolai, Kartal, Ece, Salazar, Guillem, Bork, Peer, Sunagawa, Shinichi, Zeller, Georg
Published in Genome Biol (2021)

Prediction of combination therapies based on topological modeling of the immune signaling network in multiple sclerosis

by Bernardo-Faura, Marti, Rinas, Melanie, Wirbel, Jakob, Pertsovskaya, Inna, Pliaka, Vicky, Messinis, Dimitris E., Vila, Gemma, Sakellaropoulos, Theodore, Faigle, Wolfgang, Stridh, Pernilla, Behrens, Janina R., Olsson, Tomas, Martin, Roland, Paul, Friedemann, Alexopoulos, Leonidas G., Villoslada, Pablo, Saez-Rodriguez, Julio
Published in Genome Med (2021)

Extensive transmission of microbes along the gastrointestinal tract

by Schmidt, Thomas SB, Hayward, Matthew R, Coelho, Luis P, Li, Simone S, Costea, Paul I, Voigt, Anita Y, Wirbel, Jakob, Maistrenko, Oleksandr M, Alves, Renato JC, Bergsten, Emma, de Beaufort, Carine, Sobhani, Iradj, Heintz-Buschart, Anna, Sunagawa, Shinichi, Zeller, Georg, Wilmes, Paul, Bork, Peer
Published in eLife (2019)

Unravelling the collateral damage of antibiotics on gut bacteria

by Maier, Lisa, Goemans, Camille V., Wirbel, Jakob, Kuhn, Michael, Eberl, Claudia, Pruteanu, Mihaela, Müller, Patrick, Garcia-Santamarina, Sarela, Cacace, Elisabetta, Zhang, Boyao, Gekeler, Cordula, Banerjee, Tisya, Anderson, Exene Erin, Milanese, Alessio, Löber, Ulrike, Forslund, Sofia K., Patil, Kiran Raosaheb, Zimmermann, Michael, Stecher, Bärbel, Zeller, Georg, Bork, Peer, Typas, Athanasios
Published in Nature (2021)

Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer

by Wirbel, Jakob, Pyl, Paul Theodor, Kartal, Ece, Zych, Konrad, Kashani, Alireza, Milanese, Alessio, Fleck, Jonas S, Voigt, Anita Y, Palleja, Albert, Ponnudurai, Ruby P, Sunagawa, Shinichi, Coelho, Luis Pedro, Schrotz-King, Petra, Vogtmann, Emily, Habermann, Nina, Niméus, Emma, Thomas, Andrew M, Manghi, Paolo, Gandini, Sara, Serrano, Davide, Mizutani, Sayaka, Shiroma, Hirotsugu, Shiba, Satoshi, Shibata, Tatsuhiro, Yachida, Shinichi, Yamada, Takuji, Waldron, Levi, Naccarati, Alessio, Segata, Nicola, Sinha, Rashmi, Ulrich, Cornelia M., Brenner, Hermann, Arumugam, Manimozhiyan, Bork, Peer, Zeller, Georg
Published in Nat Med (2019)