Metagenomic ventures into outer sequence space

по Dutilh, Bas E
Опубликовано в: Bacteriophage (2014)

From cultured to uncultured genome sequences: metagenomics and modeling microbial ecosystems

по Garza, Daniel R., Dutilh, Bas E.
Опубликовано в: Cell Mol Life Sci (2015)

Metagenomics in Virology

по Roux, Simon, Matthijnssens, Jelle, Dutilh, Bas E.
Опубликовано в: Encyclopedia of Virology (2021)

A global definition of expression context is conserved between orthologs, but does not correlate with sequence conservation

по Snel Berend, Huynen Martijn A, Dutilh Bas E
Опубликовано 2006-01-01

A global definition of expression context is conserved between orthologs, but does not correlate with sequence conservation

по Dutilh, Bas E, Huynen, Martijn A, Snel, Berend
Опубликовано 2006

Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly

по Dutilh, Bas E., Huynen, Martijn A., Strous, Marc
Опубликовано 2009

Metagenomics and future perspectives in virus discovery

по Mokili, John L, Rohwer, Forest, Dutilh, Bas E
Опубликовано в: Curr Opin Virol (2012)

Editorial: Computational Methods for Microbiome Analysis

по Setubal, João C., Stoye, Jens, Dutilh, Bas E.
Опубликовано в: Front Genet (2020)

Signature, a web server for taxonomic characterization of sequence samples using signature genes

по Dutilh, Bas E., He, Ying, Hekkelman, Maarten L., Huynen, Martijn A.
Опубликовано 2008

Editorial: Virus Discovery by Metagenomics: The (Im)possibilities

по Dutilh, Bas E., Reyes, Alejandro, Hall, Richard J., Whiteson, Katrine L.
Опубликовано в: Front Microbiol (2017)

OGRE: Overlap Graph-based metagenomic Read clustEring

по Balvert, Marleen, Luo, Xiao, Hauptfeld, Ernestina, Schönhuth, Alexander, Dutilh, Bas E
Опубликовано в: Bioinformatics (2020)

Practical and theoretical advances in predicting the function of a protein by its phylogenetic distribution

по Kensche, Philip R., van Noort, Vera, Dutilh, Bas E., Huynen, Martijn A.
Опубликовано 2007

Signature Genes as a Phylogenomic Tool

по Dutilh, Bas E., Snel, Berend, Ettema, Thijs J. G., Huynen, Martijn A.
Опубликовано 2008

Asymmetric relationships between proteins shape genome evolution

по Notebaart, Richard A, Kensche, Philip R, Huynen, Martijn A, Dutilh, Bas E
Опубликовано 2009

SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data

по Silva, Genivaldo Gueiros Z., Green, Kevin T., Dutilh, Bas E., Edwards, Robert A.
Опубликовано в: Bioinformatics (2016)

Prophages are associated with extensive CRISPR–Cas auto-immunity

по Nobrega, Franklin L, Walinga, Hielke, Dutilh, Bas E, Brouns, Stan J J
Опубликовано в: Nucleic Acids Res (2020)

FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares

по Silva, Genivaldo Gueiros Z., Cuevas, Daniel A., Dutilh, Bas E., Edwards, Robert A.
Опубликовано 2014

Beyond research: a primer for considerations on using viral metagenomics in the field and clinic

по Hall, Richard J., Draper, Jenny L., Nielsen, Fiona G. G., Dutilh, Bas E.
Опубликовано в: Front Microbiol (2015)

Sequence specificity between interacting and non-interacting homologs identifies interface residues – a homodimer and monomer use case

по Hou, Qingzhen, Dutilh, Bas E., Huynen, Martijn A., Heringa, Jaap, Feenstra, K. Anton
Опубликовано в: BMC Bioinformatics (2015)

Computational approaches to predict bacteriophage–host relationships

по Edwards, Robert A., McNair, Katelyn, Faust, Karoline, Raes, Jeroen, Dutilh, Bas E.
Опубликовано в: FEMS Microbiol Rev (2015)