PMAnalyzer: a new web interface for bacterial growth curve analysis

af Cuevas, Daniel A, Edwards, Robert A
Udgivet i Bioinformatics (2017)

Growth Score: a single metric to define growth in 96-well phenotype assays

af Cuevas, Daniel A., Edwards, Robert A.
Udgivet i PeerJ (2018)

FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares

af Silva, Genivaldo Gueiros Z., Cuevas, Daniel A., Dutilh, Bas E., Edwards, Robert A.
Udgivet 2014

From DNA to FBA: How to Build Your Own Genome-Scale Metabolic Model

af Cuevas, Daniel A., Edirisinghe, Janaka, Henry, Chris S., Overbeek, Ross, O’Connell, Taylor G., Edwards, Robert A.
Udgivet i Front Microbiol (2016)

Dietary prophage inducers and antimicrobials: toward landscaping the human gut microbiome

af Boling, Lance, Cuevas, Daniel A., Grasis, Juris A., Kang, Han Suh, Knowles, Ben, Levi, Kyle, Maughan, Heather, McNair, Katelyn, Rojas, Maria Isabel, Sanchez, Savannah E., Smurthwaite, Cameron, Rohwer, Forest
Udgivet i Gut Microbes (2020)

Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins

af Sanchez, Savannah E., Cuevas, Daniel A., Rostron, Jason E., Liang, Tiffany Y., Pivaroff, Cullen G., Haynes, Matthew R., Nulton, Jim, Felts, Ben, Bailey, Barbara A., Salamon, Peter, Edwards, Robert A., Burgin, Alex B., Segall, Anca M., Rohwer, Forest
Udgivet i J Vis Exp (2015)

Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition

af Lim, Yan Wei, Cuevas, Daniel A., Silva, Genivaldo Gueiros Z., Aguinaldo, Kristen, Dinsdale, Elizabeth A., Haas, Andreas F., Hatay, Mark, Sanchez, Savannah E., Wegley-Kelly, Linda, Dutilh, Bas E., Harkins, Timothy T., Lee, Clarence C., Tom, Warren, Sandin, Stuart A., Smith, Jennifer E., Zgliczynski, Brian, Vermeij, Mark J.A., Rohwer, Forest, Edwards, Robert A.
Udgivet 2014

Critical Assessment of Metagenome Interpretation – a benchmark of computational metagenomics software

af Sczyrba, Alexander, Hofmann, Peter, Belmann, Peter, Koslicki, David, Janssen, Stefan, Dröge, Johannes, Gregor, Ivan, Majda, Stephan, Fiedler, Jessika, Dahms, Eik, Bremges, Andreas, Fritz, Adrian, Garrido-Oter, Ruben, Jørgensen, Tue Sparholt, Shapiro, Nicole, Blood, Philip D., Gurevich, Alexey, Bai, Yang, Turaev, Dmitrij, DeMaere, Matthew Z., Chikhi, Rayan, Nagarajan, Niranjan, Quince, Christopher, Meyer, Fernando, Balvočiūtė, Monika, Hansen, Lars Hestbjerg, Sørensen, Søren J., Chia, Burton K. H., Denis, Bertrand, Froula, Jeff L., Wang, Zhong, Egan, Robert, Kang, Dongwan Don, Cook, Jeffrey J., Deltel, Charles, Beckstette, Michael, Lemaitre, Claire, Peterlongo, Pierre, Rizk, Guillaume, Lavenier, Dominique, Wu, Yu-Wei, Singer, Steven W., Jain, Chirag, Strous, Marc, Klingenberg, Heiner, Meinicke, Peter, Barton, Michael, Lingner, Thomas, Lin, Hsin-Hung, Liao, Yu-Chieh, Silva, Genivaldo Gueiros Z., Cuevas, Daniel A., Edwards, Robert A., Saha, Surya, Piro, Vitor C., Renard, Bernhard Y., Pop, Mihai, Klenk, Hans-Peter, Göker, Markus, Kyrpides, Nikos C., Woyke, Tanja, Vorholt, Julia A., Schulze-Lefert, Paul, Rubin, Edward M., Darling, Aaron E., Rattei, Thomas, McHardy, Alice C.
Udgivet i Nat Methods (2017)

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

af Edwards, Robert A., Vega, Alejandro A., Norman, Holly M., Ohaeri, Maria, Levi, Kyle, Dinsdale, Elizabeth A., Cinek, Ondrej, Aziz, Ramy K., McNair, Katelyn, Barr, Jeremy J., Bibby, Kyle, Brouns, Stan J. J., Cazares, Adrian, de Jonge, Patrick A., Desnues, Christelle, Díaz Muñoz, Samuel L., Fineran, Peter C., Kurilshikov, Alexander, Lavigne, Rob, Mazankova, Karla, McCarthy, David T., Nobrega, Franklin L., Muñoz, Alejandro Reyes, Tapia, German, Trefault, Nicole, Tyakht, Alexander V., Vinuesa, Pablo, Wagemans, Jeroen, Zhernakova, Alexandra, Aarestrup, Frank M., Ahmadov, Gunduz, Alassaf, Abeer, Anton, Josefa, Asangba, Abigail, Billings, Emma K., Cantu, Vito Adrian, Carlton, Jane M., Cazares, Daniel, Cho, Gyu-Sung, Condeff, Tess, Cortés, Pilar, Cranfield, Mike, Cuevas, Daniel A., De la Iglesia, Rodrigo, Decewicz, Przemyslaw, Doane, Michael P., Dominy, Nathaniel J., Dziewit, Lukasz, Elwasila, Bashir Mukhtar, Eren, A. Murat, Franz, Charles, Fu, Jingyuan, Garcia-Aljaro, Cristina, Ghedin, Elodie, Gulino, Kristen M., Haggerty, John M., Head, Steven R., Hendriksen, Rene S., Hill, Colin, Hyöty, Heikki, Ilina, Elena N., Irwin, Mitchell T., Jeffries, Thomas C., Jofre, Juan, Junge, Randall E., Kelley, Scott T., Mirzaei, Mohammadali Khan, Kowalewski, Martin, Kumaresan, Deepak, Leigh, Steven R., Lipson, David, Lisitsyna, Eugenia S., Llagostera, Montserrat, Maritz, Julia M., Marr, Linsey C., McCann, Angela, Molshanski-Mor, Shahar, Monteiro, Silvia, Moreira-Grez, Benjamin, Morris, Megan, Mugisha, Lawrence, Muniesa, Maite, Neve, Horst, Nguyen, Nam-phuong, Nigro, Olivia D., Nilsson, Anders S., O’Connell, Taylor, Odeh, Rasha, Oliver, Andrew, Piuri, Mariana, Prussin, Aaron J., Qimron, Udi, Quan, Zhe-Xue, Rainetova, Petra, Ramírez-Rojas, Adán, Raya, Raul, Reasor, Kim, Rice, Gillian A. O., Rossi, Alessandro, Santos, Ricardo, Shimashita, John, Stachler, Elyse N., Stene, Lars C., Strain, Ronan, Stumpf, Rebecca, Torres, Pedro J., Twaddle, Alan, Ibekwe, MaryAnn Ugochi, Villagra, Nicolás, Wandro, Stephen, White, Bryan, Whiteley, Andy, Whiteson, Katrine L., Wijmenga, Cisca, Zambrano, Maria M., Zschach, Henrike, Dutilh, Bas E.
Udgivet i Nat Microbiol (2019)