Lotus japonicus Symbiosis Genes Impact Microbial Interactions between Symbionts and Multikingdom Commensal Communities

Tekijä Thiergart, Thorsten, Zgadzaj, Rafal, Bozsóki, Zoltán, Garrido-Oter, Ruben, Radutoiu, Simona, Schulze-Lefert, Paul
Julkaisussa mBio (2019)

Root nodule symbiosis in Lotus japonicus drives the establishment of distinctive rhizosphere, root, and nodule bacterial communities

Tekijä Zgadzaj, Rafal, Garrido-Oter, Ruben, Jensen, Dorthe Bodker, Koprivova, Anna, Schulze-Lefert, Paul, Radutoiu, Simona
Julkaisussa Proc Natl Acad Sci U S A (2016)

Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival

Tekijä Durán, Paloma, Thiergart, Thorsten, Garrido-Oter, Ruben, Agler, Matthew, Kemen, Eric, Schulze-Lefert, Paul, Hacquard, Stéphane
Julkaisussa Cell (2018)

AMBER: Assessment of Metagenome BinnERs

Tekijä Meyer, Fernando, Hofmann, Peter, Belmann, Peter, Garrido-Oter, Ruben, Fritz, Adrian, Sczyrba, Alexander, McHardy, Alice C
Julkaisussa Gigascience (2018)

Modular Traits of the Rhizobiales Root Microbiota and Their Evolutionary Relationship with Symbiotic Rhizobia

Tekijä Garrido-Oter, Ruben, Nakano, Ryohei Thomas, Dombrowski, Nina, Ma, Ka-Wai, McHardy, Alice C., Schulze-Lefert, Paul
Julkaisussa Cell Host Microbe (2018)

Root microbiota dynamics of perennial Arabis alpina are dependent on soil residence time but independent of flowering time

Tekijä Dombrowski, Nina, Schlaeppi, Klaus, Agler, Matthew T, Hacquard, Stéphane, Kemen, Eric, Garrido-Oter, Ruben, Wunder, Jörg, Coupland, George, Schulze-Lefert, Paul
Julkaisussa ISME J (2017)

Site-specific cleavage of bacterial MucD by secreted proteases mediates antibacterial resistance in Arabidopsis

Tekijä Wang, Yiming, Garrido-Oter, Ruben, Wu, Jingni, Winkelmüller, Thomas M., Agler, Matthew, Colby, Thomas, Nobori, Tatsuya, Kemen, Eric, Tsuda, Kenichi
Julkaisussa Nat Commun (2019)

Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley

Tekijä Bulgarelli, Davide, Garrido-Oter, Ruben, Münch, Philipp C., Weiman, Aaron, Dröge, Johannes, Pan, Yao, McHardy, Alice C., Schulze-Lefert, Paul
Julkaisussa Cell Host Microbe (2015)

Tobacco Root Endophytic Arthrobacter Harbors Genomic Features Enabling the Catabolism of Host-Specific Plant Specialized Metabolites

Tekijä Shimasaki, Tomohisa, Masuda, Sachiko, Garrido-Oter, Ruben, Kawasaki, Takashi, Aoki, Yuichi, Shibata, Arisa, Suda, Wataru, Shirasu, Ken, Yazaki, Kazufumi, Nakano, Ryohei Thomas, Sugiyama, Akifumi
Julkaisussa mBio (2021)

Coordination of microbe–host homeostasis by crosstalk with plant innate immunity

Tekijä Ma, Ka-Wai, Niu, Yulong, Jia, Yong, Ordon, Jana, Copeland, Charles, Emonet, Aurélia, Geldner, Niko, Guan, Rui, Stolze, Sara Christina, Nakagami, Hirofumi, Garrido-Oter, Ruben, Schulze-Lefert, Paul
Julkaisussa Nat Plants (2021)

Root-Secreted Coumarins and the Microbiota Interact to Improve Iron Nutrition in Arabidopsis

Tekijä Harbort, Christopher J., Hashimoto, Masayoshi, Inoue, Haruhiko, Niu, Yulong, Guan, Rui, Rombolà, Adamo D., Kopriva, Stanislav, Voges, Mathias J.E.E.E., Sattely, Elizabeth S., Garrido-Oter, Ruben, Schulze-Lefert, Paul
Julkaisussa Cell Host Microbe (2020)

Balancing trade-offs between biotic and abiotic stress responses through leaf age-dependent variation in stress hormone cross-talk

Tekijä Berens, Matthias L., Wolinska, Katarzyna W., Spaepen, Stijn, Ziegler, Jörg, Nobori, Tatsuya, Nair, Aswin, Krüler, Verena, Winkelmüller, Thomas M., Wang, Yiming, Mine, Akira, Becker, Dieter, Garrido-Oter, Ruben, Schulze-Lefert, Paul, Tsuda, Kenichi
Julkaisussa Proc Natl Acad Sci U S A (2019)

Gene expression evolution in pattern-triggered immunity within Arabidopsis thaliana and across Brassicaceae species

Tekijä Winkelmüller, Thomas M, Entila, Frederickson, Anver, Shajahan, Piasecka, Anna, Song, Baoxing, Dahms, Eik, Sakakibara, Hitoshi, Gan, Xiangchao, Kułak, Karolina, Sawikowska, Aneta, Krajewski, Paweł, Tsiantis, Miltos, Garrido-Oter, Ruben, Fukushima, Kenji, Schulze-Lefert, Paul, Laurent, Stefan, Bednarek, Paweł, Tsuda, Kenichi
Julkaisussa Plant Cell (2021)

Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi

Tekijä Hacquard, Stéphane, Kracher, Barbara, Hiruma, Kei, Münch, Philipp C., Garrido-Oter, Ruben, Thon, Michael R., Weimann, Aaron, Damm, Ulrike, Dallery, Jean-Félix, Hainaut, Matthieu, Henrissat, Bernard, Lespinet, Olivier, Sacristán, Soledad, Ver Loren van Themaat, Emiel, Kemen, Eric, McHardy, Alice C., Schulze-Lefert, Paul, O'Connell, Richard J.
Julkaisussa Nat Commun (2016)

Erratum: Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi

Tekijä Hacquard, Stéphane, Kracher, Barbara, Hiruma, Kei, Münch, Philipp C., Garrido-Oter, Ruben, Thon, Michael R., Weimann, Aaron, Damm, Ulrike, Dallery, Jean-Félix, Hainaut, Matthieu, Henrissat, Bernard, Lespinet, Olivier, Sacristán, Soledad, van Themaat, Emiel Ver Loren, Kemen, Eric, McHardy, Alice C., Schulze-Lefert, Paul, O'Connell, Richard J.
Julkaisussa Nat Commun (2016)

Critical Assessment of Metagenome Interpretation – a benchmark of computational metagenomics software

Tekijä Sczyrba, Alexander, Hofmann, Peter, Belmann, Peter, Koslicki, David, Janssen, Stefan, Dröge, Johannes, Gregor, Ivan, Majda, Stephan, Fiedler, Jessika, Dahms, Eik, Bremges, Andreas, Fritz, Adrian, Garrido-Oter, Ruben, Jørgensen, Tue Sparholt, Shapiro, Nicole, Blood, Philip D., Gurevich, Alexey, Bai, Yang, Turaev, Dmitrij, DeMaere, Matthew Z., Chikhi, Rayan, Nagarajan, Niranjan, Quince, Christopher, Meyer, Fernando, Balvočiūtė, Monika, Hansen, Lars Hestbjerg, Sørensen, Søren J., Chia, Burton K. H., Denis, Bertrand, Froula, Jeff L., Wang, Zhong, Egan, Robert, Kang, Dongwan Don, Cook, Jeffrey J., Deltel, Charles, Beckstette, Michael, Lemaitre, Claire, Peterlongo, Pierre, Rizk, Guillaume, Lavenier, Dominique, Wu, Yu-Wei, Singer, Steven W., Jain, Chirag, Strous, Marc, Klingenberg, Heiner, Meinicke, Peter, Barton, Michael, Lingner, Thomas, Lin, Hsin-Hung, Liao, Yu-Chieh, Silva, Genivaldo Gueiros Z., Cuevas, Daniel A., Edwards, Robert A., Saha, Surya, Piro, Vitor C., Renard, Bernhard Y., Pop, Mihai, Klenk, Hans-Peter, Göker, Markus, Kyrpides, Nikos C., Woyke, Tanja, Vorholt, Julia A., Schulze-Lefert, Paul, Rubin, Edward M., Darling, Aaron E., Rattei, Thomas, McHardy, Alice C.
Julkaisussa Nat Methods (2017)