Rural and urban microbiota: To be or not to be?

Por Tyakht, Alexander V, Alexeev, Dmitry G, Popenko, Anna S, Kostryukova, Elena S, Govorun, Vadim M
Publicado em 2014

Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis

Por Dubinkina, Veronika B., Ischenko, Dmitry S., Ulyantsev, Vladimir I., Tyakht, Alexander V., Alexeev, Dmitry G.
Publicado no BMC Bioinformatics (2016)

Benchmark of software tools for prokaryotic chromosomal interaction domain identification

Por Magnitov, Mikhail D, Kuznetsova, Veronika S, Ulianov, Sergey V, Razin, Sergey V, Tyakht, Alexander V
Publicado no Bioinformatics (2020)

ResistoMap—online visualization of human gut microbiota antibiotic resistome

Por Yarygin, Konstantin S, Kovarsky, Boris A, Bibikova, Tatyana S, Melnikov, Damir S, Tyakht, Alexander V, Alexeev, Dmitry G
Publicado no Bioinformatics (2017)

Metabolic Phenotypes as Potential Biomarkers for Linking Gut Microbiome With Inflammatory Bowel Diseases

Por Iablokov, Stanislav N., Klimenko, Natalia S., Efimova, Daria A., Shashkova, Tatiana, Novichkov, Pavel S., Rodionov, Dmitry A., Tyakht, Alexander V.
Publicado no Front Mol Biosci (2021)

Co-occurrence patterns of bacteria within microbiome of Moscow subway

Por Klimenko, Natalia S., Tyakht, Alexander V., Toshchakov, Stepan V., Shevchenko, Margarita A., Korzhenkov, Aleksei A., Afshinnekoo, Ebrahim, Mason, Christopher E., Alexeev, Dmitry G.
Publicado no Comput Struct Biotechnol J (2020)

Gut Microbiota in Patients with Different Metabolic Statuses: Moscow Study

Por Kashtanova, Daria A., Tkacheva, Olga N., Doudinskaya, Ekaterina N., Strazhesko, Irina D., Kotovskaya, Yulia V., Popenko, Anna S., Tyakht, Alexander V., Alexeev, Dmitry G.
Publicado no Microorganisms (2018)

MALINA: a web service for visual analytics of human gut microbiota whole-genome metagenomic reads

Por Tyakht, Alexander V, Popenko, Anna S, Belenikin, Maxim S, Altukhov, Ilya A, Pavlenko, Alexander V, Kostryukova, Elena S, Selezneva, Oksana V, Larin, Andrei K, Karpova, Irina Y, Alexeev, Dmitry G
Publicado em 2012

Microbiome-Metabolome Signature of Acute Kidney Injury

Por Andrianova, Nadezda V., Popkov, Vasily A., Klimenko, Natalia S., Tyakht, Alexander V., Baydakova, Galina V., Frolova, Olga Y., Zorova, Ljubava D., Pevzner, Irina B., Zorov, Dmitry B., Plotnikov, Egor Y.
Publicado no Metabolites (2020)

RNA-Seq gene expression profiling of HepG2 cells: the influence of experimental factors and comparison with liver tissue

Por Tyakht, Alexander V, Ilina, Elena N, Alexeev, Dmitry G, Ischenko, Dmitry S, Gorbachev, Alexey Y, Semashko, Tatiana A, Larin, Andrei K, Selezneva, Oksana V, Kostryukova, Elena S, Karalkin, Pavel A, Vakhrushev, Igor V, Kurbatov, Leonid K, Archakov, Alexander I, Govorun, Vadim M
Publicado no BMC Genomics (2014)

Draft genomes of Enterococcus faecium strains isolated from human feces before and after eradication therapy against Helicobacter pylori

Por Prianichnikov, Nikita A., Malakhova, Maja V., Babenko, Vlad V., Larin, Andrei K., Olekhnovich, Evgenii I., Starikova, Elizaveta V., Chuvelev, Dmitry I., Glushchenko, Oksana E., Samoilov, Andrei E., Manolov, Alexander I., Kovarsky, Boris A., Tyakht, Alexander V., Pavlenko, Alexander V., Ilina, Elena N., Kostryukova, Elena S.
Publicado no Data Brief (2017)

Data on gut metagenomes of the patients with Helicobacter pylori infection before and after the antibiotic therapy

Por Glushchenko, Oksana E., Samoilov, Andrei E., Olekhnovich, Evgenii I., Kovarsky, Boris A., Tyakht, Alexander V., Pavlenko, Alexander V., Babenko, Vlad V., Larin, Andrei K., Kostryukova, Elena S., Malakhova, Maja V., Ilina, Elena N., Abdulkhakov, Rustem A., Safina, Dilyara I., Grigoryeva, Tatiana V., Abdulkhakov, Sayar R., Govorun, Vadim M.
Publicado no Data Brief (2017)

Microbiome Responses to an Uncontrolled Short-Term Diet Intervention in the Frame of the Citizen Science Project

Por Klimenko, Natalia S., Tyakht, Alexander V., Popenko, Anna S., Vasiliev, Anatoly S., Altukhov, Ilya A., Ischenko, Dmitry S., Shashkova, Tatiana I., Efimova, Daria A., Nikogosov, Dmitri A., Osipenko, Dmitrii A., Musienko, Sergey V., Selezneva, Kseniya S., Baranova, Ancha, Kurilshikov, Alexander M., Toshchakov, Stepan M., Korzhenkov, Aleksei A., Samarov, Nazar I., Shevchenko, Margarita A., Tepliuk, Alina V., Alexeev, Dmitry G.
Publicado no Nutrients (2018)

Data on gut metagenomes of the patients with alcoholic dependence syndrome and alcoholic liver cirrhosis

Por Tyakht, Alexander V., Dubinkina, Veronika B., Odintsova, Vera Y., Yarygin, Konstantin S., Kovarsky, Boris A., Pavlenko, Alexander V., Ischenko, Dmitry S., Popenko, Anna S., Alexeev, Dmitry G., Taraskina, Anastasiya Y., Nasyrova, Regina F., Krupitski, Evgeny M., Shalikiani, Nino V., Bakulin, Igor G., Shcherbakov, Petr L., Skorodumova, Lyubov O., Larin, Andrei K., Kostryukova, Elena S., Abdulkhakov, Rustam A., Abdulkhakov, Sayar R., Malanin, Sergey Y., Ismagilova, Ruzilya K., Grigoryeva, Tatiana V., Ilina, Elena N., Govorun, Vadim M.
Publicado no Data Brief (2017)

Microfluidic droplet platform for ultrahigh-throughput single-cell screening of biodiversity

Por Terekhov, Stanislav S., Smirnov, Ivan V., Stepanova, Anastasiya V., Bobik, Tatyana V., Mokrushina, Yuliana A., Ponomarenko, Natalia A., Belogurov, Alexey A., Rubtsova, Maria P., Kartseva, Olga V., Gomzikova, Marina O., Moskovtsev, Alexey A., Bukatin, Anton S., Dubina, Michael V., Kostryukova, Elena S., Babenko, Vladislav V., Vakhitova, Maria T., Manolov, Alexander I., Malakhova, Maja V., Kornienko, Maria A., Tyakht, Alexander V., Vanyushkina, Anna A., Ilina, Elena N., Masson, Patrick, Gabibov, Alexander G., Altman, Sidney
Publicado no Proc Natl Acad Sci U S A (2017)

Links of gut microbiota composition with alcohol dependence syndrome and alcoholic liver disease

Por Dubinkina, Veronika B., Tyakht, Alexander V., Odintsova, Vera Y., Yarygin, Konstantin S., Kovarsky, Boris A., Pavlenko, Alexander V., Ischenko, Dmitry S., Popenko, Anna S., Alexeev, Dmitry G., Taraskina, Anastasiya Y., Nasyrova, Regina F., Krupitsky, Evgeny M., Shalikiani, Nino V., Bakulin, Igor G., Shcherbakov, Petr L., Skorodumova, Lyubov O., Larin, Andrei K., Kostryukova, Elena S., Abdulkhakov, Rustam A., Abdulkhakov, Sayar R., Malanin, Sergey Y., Ismagilova, Ruzilya K., Grigoryeva, Tatiana V., Ilina, Elena N., Govorun, Vadim M.
Publicado no Microbiome (2017)

Shifts in the Human Gut Microbiota Structure Caused by Quadruple Helicobacter pylori Eradication Therapy

Por Olekhnovich, Evgenii I., Manolov, Alexander I., Samoilov, Andrey E., Prianichnikov, Nikita A., Malakhova, Maja V., Tyakht, Alexander V., Pavlenko, Alexander V., Babenko, Vlad V., Larin, Andrey K., Kovarsky, Boris A., Starikova, Elizaveta V., Glushchenko, Oksana E., Safina, Dilyara D., Markelova, Maria I., Boulygina, Eugenia A., Khusnutdinova, Dilyara R., Malanin, Sergey Y., Abdulkhakov, Sayar R., Abdulkhakov, Rustam A., Grigoryeva, Tatiana V., Kostryukova, Elena S., Govorun, Vadim M., Ilina, Elena N.
Publicado no Front Microbiol (2019)

Genetic diversity of Escherichia coli in gut microbiota of patients with Crohn’s disease discovered using metagenomic and genomic analyses

Por Tyakht, Alexander V., Manolov, Alexander I., Kanygina, Alexandra V., Ischenko, Dmitry S., Kovarsky, Boris A., Popenko, Anna S., Pavlenko, Alexander V., Elizarova, Anna V., Rakitina, Daria V., Baikova, Julia P., Ladygina, Valentina G., Kostryukova, Elena S., Karpova, Irina Y., Semashko, Tatyana A., Larin, Andrei K., Grigoryeva, Tatyana V., Sinyagina, Mariya N., Malanin, Sergei Y., Shcherbakov, Petr L., Kharitonova, Anastasiya Y., Khalif, Igor L., Shapina, Marina V., Maev, Igor V., Andreev, Dmitriy N., Belousova, Elena A., Buzunova, Yulia M., Alexeev, Dmitry G., Govorun, Vadim M.
Publicado no BMC Genomics (2018)

Human gut microbiota community structures in urban and rural populations in Russia

Por Tyakht, Alexander V., Kostryukova, Elena S., Popenko, Anna S., Belenikin, Maxim S., Pavlenko, Alexander V., Larin, Andrey K., Karpova, Irina Y., Selezneva, Oksana V., Semashko, Tatyana A., Ospanova, Elena A., Babenko, Vladislav V., Maev, Igor V., Cheremushkin, Sergey V., Kucheryavyy, Yuriy A., Shcherbakov, Petr L., Grinevich, Vladimir B., Efimov, Oleg I., Sas, Evgenii I., Abdulkhakov, Rustam A., Abdulkhakov, Sayar R., Lyalyukova, Elena A., Livzan, Maria A., Vlassov, Valentin V., Sagdeev, Renad Z., Tsukanov, Vladislav V., Osipenko, Marina F., Kozlova, Irina V., Tkachev, Alexander V., Sergienko, Valery I., Alexeev, Dmitry G., Govorun, Vadim M.
Publicado em 2013

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

Por Edwards, Robert A., Vega, Alejandro A., Norman, Holly M., Ohaeri, Maria, Levi, Kyle, Dinsdale, Elizabeth A., Cinek, Ondrej, Aziz, Ramy K., McNair, Katelyn, Barr, Jeremy J., Bibby, Kyle, Brouns, Stan J. J., Cazares, Adrian, de Jonge, Patrick A., Desnues, Christelle, Díaz Muñoz, Samuel L., Fineran, Peter C., Kurilshikov, Alexander, Lavigne, Rob, Mazankova, Karla, McCarthy, David T., Nobrega, Franklin L., Muñoz, Alejandro Reyes, Tapia, German, Trefault, Nicole, Tyakht, Alexander V., Vinuesa, Pablo, Wagemans, Jeroen, Zhernakova, Alexandra, Aarestrup, Frank M., Ahmadov, Gunduz, Alassaf, Abeer, Anton, Josefa, Asangba, Abigail, Billings, Emma K., Cantu, Vito Adrian, Carlton, Jane M., Cazares, Daniel, Cho, Gyu-Sung, Condeff, Tess, Cortés, Pilar, Cranfield, Mike, Cuevas, Daniel A., De la Iglesia, Rodrigo, Decewicz, Przemyslaw, Doane, Michael P., Dominy, Nathaniel J., Dziewit, Lukasz, Elwasila, Bashir Mukhtar, Eren, A. Murat, Franz, Charles, Fu, Jingyuan, Garcia-Aljaro, Cristina, Ghedin, Elodie, Gulino, Kristen M., Haggerty, John M., Head, Steven R., Hendriksen, Rene S., Hill, Colin, Hyöty, Heikki, Ilina, Elena N., Irwin, Mitchell T., Jeffries, Thomas C., Jofre, Juan, Junge, Randall E., Kelley, Scott T., Mirzaei, Mohammadali Khan, Kowalewski, Martin, Kumaresan, Deepak, Leigh, Steven R., Lipson, David, Lisitsyna, Eugenia S., Llagostera, Montserrat, Maritz, Julia M., Marr, Linsey C., McCann, Angela, Molshanski-Mor, Shahar, Monteiro, Silvia, Moreira-Grez, Benjamin, Morris, Megan, Mugisha, Lawrence, Muniesa, Maite, Neve, Horst, Nguyen, Nam-phuong, Nigro, Olivia D., Nilsson, Anders S., O’Connell, Taylor, Odeh, Rasha, Oliver, Andrew, Piuri, Mariana, Prussin, Aaron J., Qimron, Udi, Quan, Zhe-Xue, Rainetova, Petra, Ramírez-Rojas, Adán, Raya, Raul, Reasor, Kim, Rice, Gillian A. O., Rossi, Alessandro, Santos, Ricardo, Shimashita, John, Stachler, Elyse N., Stene, Lars C., Strain, Ronan, Stumpf, Rebecca, Torres, Pedro J., Twaddle, Alan, Ibekwe, MaryAnn Ugochi, Villagra, Nicolás, Wandro, Stephen, White, Bryan, Whiteley, Andy, Whiteson, Katrine L., Wijmenga, Cisca, Zambrano, Maria M., Zschach, Henrike, Dutilh, Bas E.
Publicado no Nat Microbiol (2019)