The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation

由 Wilkinson Mark D, Vandervalk Benjamin, McCarthy Luke
出版 2011-10-01

The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation

由 Wilkinson, Mark D, Vandervalk, Benjamin, McCarthy, Luke
出版 2011

ntHash: recursive nucleotide hashing

由 Mohamadi, Hamid, Chu, Justin, Vandervalk, Benjamin P., Birol, Inanc
發表在 Bioinformatics (2016)

SADI, SHARE, and the <it>in silico</it> scientific method

由 Kawas Edward, Withers David, Vandervalk Benjamin, McCarthy Luke, Wilkinson Mark D, Samadian Soroush
出版 2010-12-01

SADI, SHARE, and the in silico scientific method

由 Wilkinson, Mark D, McCarthy, Luke, Vandervalk, Benjamin, Withers, David, Kawas, Edward, Samadian, Soroush
出版 2010

Kollector: transcript-informed, targeted de novo assembly of gene loci

由 Kucuk, Erdi, Chu, Justin, Vandervalk, Benjamin P, Hammond, S Austin, Warren, René L, Birol, Inanc
發表在 Bioinformatics (2017)

Kollector: transcript-informed, targeted de novo assembly of gene loci

由 Kucuk, Erdi, Chu, Justin, Vandervalk, Benjamin P, Austin Hammond, S, Warren, René L, Birol, Inanc
發表在 Bioinformatics (2017)

ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data

由 Khan, Hamza, Mohamadi, Hamid, Vandervalk, Benjamin P, Warren, Rene L, Chu, Justin, Birol, Inanc
發表在 Bioinformatics (2018)

Sealer: a scalable gap-closing application for finishing draft genomes

由 Paulino, Daniel, Warren, René L., Vandervalk, Benjamin P., Raymond, Anthony, Jackman, Shaun D., Birol, Inanç
發表在 BMC Bioinformatics (2015)

DIDA: Distributed Indexing Dispatched Alignment

由 Mohamadi, Hamid, Vandervalk, Benjamin P, Raymond, Anthony, Jackman, Shaun D, Chu, Justin, Breshears, Clay P, Birol, Inanc
發表在 PLoS One (2015)

ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers

由 Coombe, Lauren, Zhang, Jessica, Vandervalk, Benjamin P., Chu, Justin, Jackman, Shaun D., Birol, Inanc, Warren, René L.
發表在 BMC Bioinformatics (2018)

LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads

由 Warren, René L., Yang, Chen, Vandervalk, Benjamin P., Behsaz, Bahar, Lagman, Albert, Jones, Steven J. M., Birol, Inanç
發表在 Gigascience (2015)

Spaced Seed Data Structures for De Novo Assembly

由 Birol, Inanç, Chu, Justin, Mohamadi, Hamid, Jackman, Shaun D., Raghavan, Karthika, Vandervalk, Benjamin P., Raymond, Anthony, Warren, René L.
發表在 Int J Genomics (2015)

Konnector v2.0: pseudo-long reads from paired-end sequencing data

由 Vandervalk, Benjamin P, Yang, Chen, Xue, Zhuyi, Raghavan, Karthika, Chu, Justin, Mohamadi, Hamid, Jackman, Shaun D, Chiu, Readman, Warren, René L, Birol, Inanç
發表在 BMC Med Genomics (2015)

ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter

由 Jackman, Shaun D., Vandervalk, Benjamin P., Mohamadi, Hamid, Chu, Justin, Yeo, Sarah, Hammond, S. Austin, Jahesh, Golnaz, Khan, Hamza, Coombe, Lauren, Warren, Rene L., Birol, Inanc
發表在 Genome Res (2017)

Tigmint: correcting assembly errors using linked reads from large molecules

由 Jackman, Shaun D., Coombe, Lauren, Chu, Justin, Warren, Rene L., Vandervalk, Benjamin P., Yeo, Sarah, Xue, Zhuyi, Mohamadi, Hamid, Bohlmann, Joerg, Jones, Steven J.M., Birol, Inanc
發表在 BMC Bioinformatics (2018)

Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics’ GemCode Sequencing Data

由 Coombe, Lauren, Warren, René L., Jackman, Shaun D., Yang, Chen, Vandervalk, Benjamin P., Moore, Richard A., Pleasance, Stephen, Coope, Robin J., Bohlmann, Joerg, Holt, Robert A., Jones, Steven J. M., Birol, Inanc
發表在 PLoS One (2016)

Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation

由 Jackman, Shaun D., Warren, René L., Gibb, Ewan A., Vandervalk, Benjamin P., Mohamadi, Hamid, Chu, Justin, Raymond, Anthony, Pleasance, Stephen, Coope, Robin, Wildung, Mark R., Ritland, Carol E., Bousquet, Jean, Jones, Steven J. M., Bohlmann, Joerg, Birol, Inanç
發表在 Genome Biol Evol (2015)

The North American bullfrog draft genome provides insight into hormonal regulation of long noncoding RNA

由 Hammond, S. Austin, Warren, René L., Vandervalk, Benjamin P., Kucuk, Erdi, Khan, Hamza, Gibb, Ewan A., Pandoh, Pawan, Kirk, Heather, Zhao, Yongjun, Jones, Martin, Mungall, Andrew J., Coope, Robin, Pleasance, Stephen, Moore, Richard A., Holt, Robert A., Round, Jessica M., Ohora, Sara, Walle, Branden V., Veldhoen, Nik, Helbing, Caren C., Birol, Inanc
發表在 Nat Commun (2017)

Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data

由 Birol, Inanc, Raymond, Anthony, Jackman, Shaun D., Pleasance, Stephen, Coope, Robin, Taylor, Greg A., Yuen, Macaire Man Saint, Keeling, Christopher I., Brand, Dana, Vandervalk, Benjamin P., Kirk, Heather, Pandoh, Pawan, Moore, Richard A., Zhao, Yongjun, Mungall, Andrew J., Jaquish, Barry, Yanchuk, Alvin, Ritland, Carol, Boyle, Brian, Bousquet, Jean, Ritland, Kermit, MacKay, John, Bohlmann, Jörg, Jones, Steven J.M.
出版 2013