The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation

بواسطة Wilkinson Mark D, Vandervalk Benjamin, McCarthy Luke
منشور في 2011-10-01

The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation

بواسطة Wilkinson, Mark D, Vandervalk, Benjamin, McCarthy, Luke
منشور في 2011

ntHash: recursive nucleotide hashing

بواسطة Mohamadi, Hamid, Chu, Justin, Vandervalk, Benjamin P., Birol, Inanc
الحاوية / القاعدة Bioinformatics (2016)

SADI, SHARE, and the <it>in silico</it> scientific method

بواسطة Kawas Edward, Withers David, Vandervalk Benjamin, McCarthy Luke, Wilkinson Mark D, Samadian Soroush
منشور في 2010-12-01

SADI, SHARE, and the in silico scientific method

بواسطة Wilkinson, Mark D, McCarthy, Luke, Vandervalk, Benjamin, Withers, David, Kawas, Edward, Samadian, Soroush
منشور في 2010

Kollector: transcript-informed, targeted de novo assembly of gene loci

بواسطة Kucuk, Erdi, Chu, Justin, Vandervalk, Benjamin P, Hammond, S Austin, Warren, René L, Birol, Inanc
الحاوية / القاعدة Bioinformatics (2017)

Kollector: transcript-informed, targeted de novo assembly of gene loci

بواسطة Kucuk, Erdi, Chu, Justin, Vandervalk, Benjamin P, Austin Hammond, S, Warren, René L, Birol, Inanc
الحاوية / القاعدة Bioinformatics (2017)

ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data

بواسطة Khan, Hamza, Mohamadi, Hamid, Vandervalk, Benjamin P, Warren, Rene L, Chu, Justin, Birol, Inanc
الحاوية / القاعدة Bioinformatics (2018)

Sealer: a scalable gap-closing application for finishing draft genomes

بواسطة Paulino, Daniel, Warren, René L., Vandervalk, Benjamin P., Raymond, Anthony, Jackman, Shaun D., Birol, Inanç
الحاوية / القاعدة BMC Bioinformatics (2015)

DIDA: Distributed Indexing Dispatched Alignment

بواسطة Mohamadi, Hamid, Vandervalk, Benjamin P, Raymond, Anthony, Jackman, Shaun D, Chu, Justin, Breshears, Clay P, Birol, Inanc
الحاوية / القاعدة PLoS One (2015)

ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers

بواسطة Coombe, Lauren, Zhang, Jessica, Vandervalk, Benjamin P., Chu, Justin, Jackman, Shaun D., Birol, Inanc, Warren, René L.
الحاوية / القاعدة BMC Bioinformatics (2018)

LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads

بواسطة Warren, René L., Yang, Chen, Vandervalk, Benjamin P., Behsaz, Bahar, Lagman, Albert, Jones, Steven J. M., Birol, Inanç
الحاوية / القاعدة Gigascience (2015)

Spaced Seed Data Structures for De Novo Assembly

بواسطة Birol, Inanç, Chu, Justin, Mohamadi, Hamid, Jackman, Shaun D., Raghavan, Karthika, Vandervalk, Benjamin P., Raymond, Anthony, Warren, René L.
الحاوية / القاعدة Int J Genomics (2015)

Konnector v2.0: pseudo-long reads from paired-end sequencing data

بواسطة Vandervalk, Benjamin P, Yang, Chen, Xue, Zhuyi, Raghavan, Karthika, Chu, Justin, Mohamadi, Hamid, Jackman, Shaun D, Chiu, Readman, Warren, René L, Birol, Inanç
الحاوية / القاعدة BMC Med Genomics (2015)

ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter

بواسطة Jackman, Shaun D., Vandervalk, Benjamin P., Mohamadi, Hamid, Chu, Justin, Yeo, Sarah, Hammond, S. Austin, Jahesh, Golnaz, Khan, Hamza, Coombe, Lauren, Warren, Rene L., Birol, Inanc
الحاوية / القاعدة Genome Res (2017)

Tigmint: correcting assembly errors using linked reads from large molecules

بواسطة Jackman, Shaun D., Coombe, Lauren, Chu, Justin, Warren, Rene L., Vandervalk, Benjamin P., Yeo, Sarah, Xue, Zhuyi, Mohamadi, Hamid, Bohlmann, Joerg, Jones, Steven J.M., Birol, Inanc
الحاوية / القاعدة BMC Bioinformatics (2018)

Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics’ GemCode Sequencing Data

بواسطة Coombe, Lauren, Warren, René L., Jackman, Shaun D., Yang, Chen, Vandervalk, Benjamin P., Moore, Richard A., Pleasance, Stephen, Coope, Robin J., Bohlmann, Joerg, Holt, Robert A., Jones, Steven J. M., Birol, Inanc
الحاوية / القاعدة PLoS One (2016)

Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation

بواسطة Jackman, Shaun D., Warren, René L., Gibb, Ewan A., Vandervalk, Benjamin P., Mohamadi, Hamid, Chu, Justin, Raymond, Anthony, Pleasance, Stephen, Coope, Robin, Wildung, Mark R., Ritland, Carol E., Bousquet, Jean, Jones, Steven J. M., Bohlmann, Joerg, Birol, Inanç
الحاوية / القاعدة Genome Biol Evol (2015)

The North American bullfrog draft genome provides insight into hormonal regulation of long noncoding RNA

بواسطة Hammond, S. Austin, Warren, René L., Vandervalk, Benjamin P., Kucuk, Erdi, Khan, Hamza, Gibb, Ewan A., Pandoh, Pawan, Kirk, Heather, Zhao, Yongjun, Jones, Martin, Mungall, Andrew J., Coope, Robin, Pleasance, Stephen, Moore, Richard A., Holt, Robert A., Round, Jessica M., Ohora, Sara, Walle, Branden V., Veldhoen, Nik, Helbing, Caren C., Birol, Inanc
الحاوية / القاعدة Nat Commun (2017)

Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data

بواسطة Birol, Inanc, Raymond, Anthony, Jackman, Shaun D., Pleasance, Stephen, Coope, Robin, Taylor, Greg A., Yuen, Macaire Man Saint, Keeling, Christopher I., Brand, Dana, Vandervalk, Benjamin P., Kirk, Heather, Pandoh, Pawan, Moore, Richard A., Zhao, Yongjun, Mungall, Andrew J., Jaquish, Barry, Yanchuk, Alvin, Ritland, Carol, Boyle, Brian, Bousquet, Jean, Ritland, Kermit, MacKay, John, Bohlmann, Jörg, Jones, Steven J.M.
منشور في 2013