The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation

অনুযায়ী Wilkinson Mark D, Vandervalk Benjamin, McCarthy Luke
প্রকাশিত 2011-10-01

The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation

অনুযায়ী Wilkinson, Mark D, Vandervalk, Benjamin, McCarthy, Luke
প্রকাশিত 2011

ntHash: recursive nucleotide hashing

অনুযায়ী Mohamadi, Hamid, Chu, Justin, Vandervalk, Benjamin P., Birol, Inanc
প্রকাশিত Bioinformatics (2016)

SADI, SHARE, and the <it>in silico</it> scientific method

অনুযায়ী Kawas Edward, Withers David, Vandervalk Benjamin, McCarthy Luke, Wilkinson Mark D, Samadian Soroush
প্রকাশিত 2010-12-01

SADI, SHARE, and the in silico scientific method

অনুযায়ী Wilkinson, Mark D, McCarthy, Luke, Vandervalk, Benjamin, Withers, David, Kawas, Edward, Samadian, Soroush
প্রকাশিত 2010

Kollector: transcript-informed, targeted de novo assembly of gene loci

অনুযায়ী Kucuk, Erdi, Chu, Justin, Vandervalk, Benjamin P, Hammond, S Austin, Warren, René L, Birol, Inanc
প্রকাশিত Bioinformatics (2017)

Kollector: transcript-informed, targeted de novo assembly of gene loci

অনুযায়ী Kucuk, Erdi, Chu, Justin, Vandervalk, Benjamin P, Austin Hammond, S, Warren, René L, Birol, Inanc
প্রকাশিত Bioinformatics (2017)

ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data

অনুযায়ী Khan, Hamza, Mohamadi, Hamid, Vandervalk, Benjamin P, Warren, Rene L, Chu, Justin, Birol, Inanc
প্রকাশিত Bioinformatics (2018)

Sealer: a scalable gap-closing application for finishing draft genomes

অনুযায়ী Paulino, Daniel, Warren, René L., Vandervalk, Benjamin P., Raymond, Anthony, Jackman, Shaun D., Birol, Inanç
প্রকাশিত BMC Bioinformatics (2015)

DIDA: Distributed Indexing Dispatched Alignment

অনুযায়ী Mohamadi, Hamid, Vandervalk, Benjamin P, Raymond, Anthony, Jackman, Shaun D, Chu, Justin, Breshears, Clay P, Birol, Inanc
প্রকাশিত PLoS One (2015)

ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers

অনুযায়ী Coombe, Lauren, Zhang, Jessica, Vandervalk, Benjamin P., Chu, Justin, Jackman, Shaun D., Birol, Inanc, Warren, René L.
প্রকাশিত BMC Bioinformatics (2018)

LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads

অনুযায়ী Warren, René L., Yang, Chen, Vandervalk, Benjamin P., Behsaz, Bahar, Lagman, Albert, Jones, Steven J. M., Birol, Inanç
প্রকাশিত Gigascience (2015)

Spaced Seed Data Structures for De Novo Assembly

অনুযায়ী Birol, Inanç, Chu, Justin, Mohamadi, Hamid, Jackman, Shaun D., Raghavan, Karthika, Vandervalk, Benjamin P., Raymond, Anthony, Warren, René L.
প্রকাশিত Int J Genomics (2015)

Konnector v2.0: pseudo-long reads from paired-end sequencing data

অনুযায়ী Vandervalk, Benjamin P, Yang, Chen, Xue, Zhuyi, Raghavan, Karthika, Chu, Justin, Mohamadi, Hamid, Jackman, Shaun D, Chiu, Readman, Warren, René L, Birol, Inanç
প্রকাশিত BMC Med Genomics (2015)

ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter

অনুযায়ী Jackman, Shaun D., Vandervalk, Benjamin P., Mohamadi, Hamid, Chu, Justin, Yeo, Sarah, Hammond, S. Austin, Jahesh, Golnaz, Khan, Hamza, Coombe, Lauren, Warren, Rene L., Birol, Inanc
প্রকাশিত Genome Res (2017)

Tigmint: correcting assembly errors using linked reads from large molecules

অনুযায়ী Jackman, Shaun D., Coombe, Lauren, Chu, Justin, Warren, Rene L., Vandervalk, Benjamin P., Yeo, Sarah, Xue, Zhuyi, Mohamadi, Hamid, Bohlmann, Joerg, Jones, Steven J.M., Birol, Inanc
প্রকাশিত BMC Bioinformatics (2018)

Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics’ GemCode Sequencing Data

অনুযায়ী Coombe, Lauren, Warren, René L., Jackman, Shaun D., Yang, Chen, Vandervalk, Benjamin P., Moore, Richard A., Pleasance, Stephen, Coope, Robin J., Bohlmann, Joerg, Holt, Robert A., Jones, Steven J. M., Birol, Inanc
প্রকাশিত PLoS One (2016)

Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation

অনুযায়ী Jackman, Shaun D., Warren, René L., Gibb, Ewan A., Vandervalk, Benjamin P., Mohamadi, Hamid, Chu, Justin, Raymond, Anthony, Pleasance, Stephen, Coope, Robin, Wildung, Mark R., Ritland, Carol E., Bousquet, Jean, Jones, Steven J. M., Bohlmann, Joerg, Birol, Inanç
প্রকাশিত Genome Biol Evol (2015)

The North American bullfrog draft genome provides insight into hormonal regulation of long noncoding RNA

অনুযায়ী Hammond, S. Austin, Warren, René L., Vandervalk, Benjamin P., Kucuk, Erdi, Khan, Hamza, Gibb, Ewan A., Pandoh, Pawan, Kirk, Heather, Zhao, Yongjun, Jones, Martin, Mungall, Andrew J., Coope, Robin, Pleasance, Stephen, Moore, Richard A., Holt, Robert A., Round, Jessica M., Ohora, Sara, Walle, Branden V., Veldhoen, Nik, Helbing, Caren C., Birol, Inanc
প্রকাশিত Nat Commun (2017)

Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data

অনুযায়ী Birol, Inanc, Raymond, Anthony, Jackman, Shaun D., Pleasance, Stephen, Coope, Robin, Taylor, Greg A., Yuen, Macaire Man Saint, Keeling, Christopher I., Brand, Dana, Vandervalk, Benjamin P., Kirk, Heather, Pandoh, Pawan, Moore, Richard A., Zhao, Yongjun, Mungall, Andrew J., Jaquish, Barry, Yanchuk, Alvin, Ritland, Carol, Boyle, Brian, Bousquet, Jean, Ritland, Kermit, MacKay, John, Bohlmann, Jörg, Jones, Steven J.M.
প্রকাশিত 2013