Quantifying the Sources of Kinetic Frustration in Folding Simulations of Small Proteins

Por Savol, Andrej J., Chennubhotla, Chakra S.
Publicado em 2014

Approximating frustration scores in complex networks via perturbed Laplacian spectra

Por Savol, Andrej J., Chennubhotla, Chakra S.
Publicado no Phys Rev E Stat Nonlin Soft Matter Phys (2015)

Event Detection and Sub-state Discovery from Bio-molecular Simulations Using Higher-Order Statistics: Application To Enzyme Adenylate Kinase

Por Ramanathan, Arvind, Savol, Andrej J., Agarwal, Pratul K., Chennubhotla, Chakra S.
Publicado em 2012

Modeling boundary conditions for balanced proliferation in metastatic latency

Por Taylor, Donald P, Wells, Jakob Z, Savol, Andrej, Chennubhotla, Chakra, Wells, Alan
Publicado em 2013

Discovering Conformational Sub-States Relevant to Protein Function

Por Ramanathan, Arvind, Savol, Andrej J., Langmead, Christopher J., Agarwal, Pratul K., Chennubhotla, Chakra S.
Publicado em 2011

QAARM: quasi-anharmonic autoregressive model reveals molecular recognition pathways in ubiquitin

Por Savol, Andrej J., Burger, Virginia M., Agarwal, Pratul K., Ramanathan, Arvind, Chennubhotla, Chakra S.
Publicado em 2011

Genome-wide identification of autosomal genes with allelic imbalance of chromatin state

Por Savol, Andrej J., Wang, Peggy I., Jeon, Yesu, Colognori, David, Yildirim, Eda, Pinter, Stefan F., Payer, Bernhard, Lee, Jeannie T., Sadreyev, Ruslan I.
Publicado no PLoS One (2017)

Survival in quiescence requires the euchromatic deployment of Clr4/SUV39H by Argonaute-associated small RNAs

Por Joh, Richard I., Khanduja, Jasbeer S., Calvo, Isabel A., Mistry, Meeta, Palmieri, Christina M., Savol, Andrej J., Ho Sui, Shannan J., Sadreyev, Ruslan I., Aryee, Martin J., Motamedi, Mo
Publicado no Mol Cell (2016)

Mutation of a nucleosome compaction region disrupts Polycomb-mediated axial patterning

Por Lau, Mei Sheng, Schwartz, Matthew G., Kundu, Sharmistha, Savol, Andrej J., Wang, Peggy I., Marr, Sharon K., Grau, Daniel J., Schorderet, Patrick, Sadreyev, Ruslan I., Tabin, Clifford J., Kingston, Robert E.
Publicado no Science (2017)

DUSP9 modulates DNA hypomethylation in female mouse pluripotent stem cells

Por Choi, Jiho, Clement, Kendell, Huebner, Aaron J., Webster, Jamie, Rose, Christopher M., Brumbaugh, Justin, Walsh, Ryan M., Lee, Soohyun, Savol, Andrej, Etchegaray, Jean-Pierre, Gu, Hongcang, Boyle, Patrick, Elling, Ulrich, Mostoslavsky, Raul, Sadreyev, Ruslan, Park, Peter J., Gygi, Steven P., Meissner, Alexander, Hochedlinger, Konrad
Publicado no Cell Stem Cell (2017)

Prolonged Mek1/2 suppression impairs the developmental potential of embryonic stem cells

Por Choi, Jiho, Huebner, Aaron J, Clement, Kendell, Walsh, Ryan M, Savol, Andrej, Lin, Kaixuan, Gu, Hongcang, Di Stefano, Bruno, Brumbaugh, Justin, Kim, Sang-Yong, Sharif, Jafar, Rose, Christopher M., Mohammad, Arman, Odajima, Junko, Charron, Jean, Shioda, Toshi, Gnirke, Andreas, Gygi, Steven, Koseki, Haruhiko, Sadreyev, Ruslan I., Xiao, Andrew, Meissner, Alexander, Hochedlinger, Konrad
Publicado no Nature (2017)

Macrophages Facilitate Electrical Conduction in the Heart

Por Hulsmans, Maarten, Clauss, Sebastian, Xiao, Ling, Aguirre, Aaron D., King, Kevin R., Hanley, Alan, Hucker, William J., Wülfers, Eike M., Seemann, Gunnar, Courties, Gabriel, Iwamoto, Yoshiko, Sun, Yuan, Savol, Andrej J., Sager, Hendrik B., Lavine, Kory J., Fishbein, Gregory A., Capen, Diane E., Da Silva, Nicolas, Miquerol, Lucile, Wakimoto, Hiroko, Seidman, Christine E., Seidman, Jonathan G., Sadreyev, Ruslan I., Naxerova, Kamila, Mitchell, Richard N., Brown, Dennis, Libby, Peter, Weissleder, Ralph, Swirski, Filip K., Kohl, Peter, Vinegoni, Claudio, Milan, David J., Ellinor, Patrick T., Nahrendorf, Matthias
Publicado no Cell (2017)