Trypsinogen activation as observed in accelerated molecular dynamics simulations

Por Boechi, Leonardo, Pierce, Levi, Komives, Elizabeth A, McCammon, J Andrew
Publicado no Protein Sci (2014)

Over half of breakpoints in gene pairs involved in cancer-specific recurrent translocations are mapped to human chromosomal fragile sites

Por Burrow, Allison A, Williams, Laura E, Pierce, Levi CT, Wang, Yuh-Hwa
Publicado em 2009

Improving the Efficiency of Free Energy Calculations in the Amber Molecular Dynamics Package

Por Kaus, Joseph W., Pierce, Levi T., Walker, Ross C., McCammont, J. Andrew
Publicado em 2013

DNA Secondary Structure at Chromosomal Fragile Sites in Human Disease

Por Thys, Ryan G, Lehman, Christine E, Pierce, Levi C. T, Wang, Yuh-Hwa
Publicado no Curr Genomics (2015)

Environmental and chemotherapeutic agents induce breakage at genes involved in leukemia-causing gene rearrangements in human hematopoietic stem/progenitor cells

Por Thys, Ryan G., Lehman, Christine E., Pierce, Levi C.T., Wang, Yuh-Hwa
Publicado no Mutat Res (2015)

On the Use of Accelerated Molecular Dynamics to Enhance Configurational Sampling in Ab Initio Simulations

Por Bucher, Denis, Pierce, Levi C. T., McCammon, J. Andrew, Markwick, Phineus R. L.
Publicado em 2011

Role of DNA secondary structures in fragile site breakage along human chromosome 10

Por Dillon, Laura W., Pierce, Levi C. T., Ng, Maggie C. Y., Wang, Yuh-Hwa
Publicado em 2013

Theoretical Insights Reveal Novel Motions in Csk’s SH3 Domain That Control Kinase Activation

Por Barkho, Sulyman, Pierce, Levi C. T., Li, Sheng, Adams, Joseph A., Jennings, Patricia A.
Publicado no PLoS One (2015)

Correction: Theoretical Insights Reveal Novel Motions in Csk’s SH3 Domain That Control Kinase Activation

Por Barkho, Sulyman, Pierce, Levi C. T., Li, Sheng, Adams, Joseph A., Jennings, Patricia A.
Publicado no PLoS One (2015)

Adaptive Accelerated Molecular Dynamics (Ad-AMD) Revealing the Molecular Plasticity of P450cam

Por Markwick, Phineus R. L., Pierce, Levi C. T., Goodin, David B., McCammon, J. Andrew
Publicado em 2011

Accelerating chemical reactions: Exploring reactive free-energy surfaces using accelerated ab initio molecular dynamics

Por Pierce, Levi C. T., Markwick, Phineus R. L., McCammon, J. Andrew, Doltsinis, Nikos L.
Publicado em 2011

Protecting High Energy Barriers: A New Equation to Regulate Boost Energy in Accelerated Molecular Dynamics Simulations

Por Sinko, William, de Oliveira, César Augusto F., Pierce, Levi C. T., McCammon, J. Andrew
Publicado em 2011

Dynamics and Calcium Association to the N-Terminal Regulatory Domain of Human Cardiac Troponin C: A Multiscale Computational Study

Por Lindert, Steffen, Kekenes-Huskey, Peter M., Huber, Gary, Pierce, Levi, McCammon, J. Andrew
Publicado em 2012

Influence of N-Myristylation and Ligand Binding on the Flexibility of the Catalytic Subunit of Protein Kinase A

Por Bastidas, Adam C., Pierce, Levi C., Walker, Ross C., Johnson, David A., Taylor, Susan S.
Publicado em 2013

Structural insight into the separate roles of inositol tetraphosphate and deacetylase-activating domain in activation of histone deacetylase 3

Por Arrar, Mehrnoosh, Turnham, Rigney, Pierce, Levi, de Oliveira, Cesar Augusto F, McCammon, J Andrew
Publicado em 2013

DNA Topoisomerases Participate in Fragility of the Oncogene RET

Por Dillon, Laura W., Pierce, Levi C. T., Lehman, Christine E., Nikiforov, Yuri E., Wang, Yuh-Hwa
Publicado em 2013

Improved Reweighting of Accelerated Molecular Dynamics Simulations for Free Energy Calculation

Por Miao, Yinglong, Sinko, William, Pierce, Levi, Bucher, Denis, Walker, Ross C., McCammon, J. Andrew
Publicado em 2014

Drug screening strategy for human membrane proteins: from NMR protein backbone structure to in silica- and NMR-screened hits

Por Lindert, Steffen, Maslennikov, Innokentiy, Chiu, Ellis, Pierce, Levi C, McCammon, J. Andrew, Choe, Senyon
Publicado no Biochem Biophys Res Commun (2014)

Exploring the Photophysical Properties of Molecular Systems Using Excited State Accelerated ab Initio Molecular Dynamics

Por Ortiz-Sánchez, Juan Manuel, Bucher, Denis, Pierce, Levi C. T., Markwick, Phineus R. L., McCammon, J. Andrew
Publicado em 2012

Routine Access to Millisecond Time Scale Events with Accelerated Molecular Dynamics

Por Pierce, Levi C.T., Salomon-Ferrer, Romelia, Augusto F. de Oliveira, Cesar, McCammon, J. Andrew, Walker, Ross C.
Publicado em 2012