Intrapatient Escape in the A*0201-Restricted Epitope SLYNTVATL Drives Evolution of Human Immunodeficiency Virus Type 1 at the Population Level

Por Edwards, Charles T. T., Pfafferott, Katja J., Goulder, Philip J. R., Phillips, Rodney E., Holmes, Edward C.
Publicado em 2005

Anti-Hepatitis C Virus T-Cell Immunity in the Context of Multiple Exposures to the Virus

Por Pfafferott, Katja, Deshpande, Pooja, McKinnon, Elizabeth, Merani, Shahzma, Lucas, Andrew, Heckerman, David, Mallal, Simon, John, Mina, Gaudieri, Silvana, Lucas, Michaela
Publicado no PLoS One (2015)

The broad assessment of HCV genotypes 1 and 3 antigenic targets reveals limited cross-reactivity with implications for vaccine design

Por von Delft, Annette, Humphreys, Isla S, Brown, Anthony, Pfafferott, Katja, Lucas, Michaela, Klenerman, Paul, Lauer, Georg M, Cox, Andrea L, Gaudieri, Silvana, Barnes, Eleanor
Publicado no Gut (2016)

Molecular Mechanisms of HIV Type 1 Prophylaxis Failure Revealed by Single-Genome Sequencing

Por Li, Hui, Blair, Lily, Chen, Yalu, Learn, Gerald, Pfafferott, Katja, John, Mina, Bhattacharya, Tanmoy, Hahn, Beatrice H., Mallal, Simon, Shaw, George M., Bar, Katharine J.
Publicado em 2013

Constrained Pattern of Viral Evolution in Acute and Early HCV Infection Limits Viral Plasticity

Por Pfafferott, Katja, Gaudieri, Silvana, Ulsenheimer, Axel, James, Ian, Heeg, Malte, Nolan, David, John, Mina, Rauch, Andri, Mallal, Simon, Lucas, Andrew, Klenerman, Paul, Diepolder, Helmut M., Lucas, Michaela
Publicado em 2011

Automation of the ELISpot assay for high-throughput detection of antigen-specific T-cell responses

Por Almeida, Coral-Ann M., Roberts, Steven G., Laird, Rebecca, McKinnon, Elizabeth, Ahmed, Imran, Pfafferott, Katja, Turley, Joanne, Keane, Niamh M., Lucas, Andrew, Rushton, Ben, Chopra, Abha, Mallal, Simon, John, Mina
Publicado em 2009

Full-Length Characterization of Hepatitis C Virus Subtype 3a Reveals Novel Hypervariable Regions under Positive Selection during Acute Infection

Por Humphreys, Isla, Fleming, Vicki, Fabris, Paolo, Parker, Joe, Schulenberg, Bodo, Brown, Anthony, Demetriou, Charis, Gaudieri, Silvana, Pfafferott, Katja, Lucas, Michaela, Collier, Jane, Huang, Kuan-Hsiang Gary, Pybus, Oliver G., Klenerman, Paul, Barnes, Eleanor
Publicado em 2009

Full-Length Characterization of Hepatitis C Virus Subtype 3a Reveals Novel Hypervariable Regions under Positive Selection during Acute Infection

Por Humphreys, Isla, Fleming, Vicki, Fabris, Paolo, Parker, Joe, Schulenberg, Bodo, Brown, Anthony, Demetriou, Charis, Gaudieri, Silvana, Pfafferott, Katja, Lucas, Michaela, Collier, Jane, Huang, Kuan-Hsiang Gary, Pybus, Oliver G., Klenerman, Paul, Barnes, Eleanor
Publicado em 2010

Evidence of Viral Adaptation to HLA Class I-Restricted Immune Pressure in Chronic Hepatitis C Virus Infection

Por Gaudieri, Silvana, Rauch, Andri, Park, Lawrence P., Freitas, Elizabeth, Herrmann, Susan, Jeffrey, Gary, Cheng, Wendy, Pfafferott, Katja, Naidoo, Kiloshni, Chapman, Russell, Battegay, Manuel, Weber, Rainer, Telenti, Amalio, Furrer, Hansjakob, James, Ian, Lucas, Michaela, Mallal, Simon A.
Publicado em 2006

Evidence of Viral Adaptation to HLA Class I-Restricted Immune Pressure in Chronic Hepatitis C Virus Infection

Por Gaudieri, Silvana, Rauch, Andri, Park, Lawrence P., Freitas, Elizabeth, Herrmann, Susan, Jeffrey, Gary, Cheng, Wendy, Pfafferott, Katja, Naidoo, Kiloshni, Chapman, Russell, Battegay, Manuel, Weber, Rainer, Telenti, Amalio, Furrer, Hansjakob, James, Ian, Lucas, Michaela, Mallal, Simon A.
Publicado em 2007

Relative resistance of HIV-1 founder viruses to control by interferon-alpha

Por Fenton-May, Angharad E, Dibben, Oliver, Emmerich, Tanja, Ding, Haitao, Pfafferott, Katja, Aasa-Chapman, Marlen M, Pellegrino, Pierre, Williams, Ian, Cohen, Myron S, Gao, Feng, Shaw, George M, Hahn, Beatrice H, Ochsenbauer, Christina, Kappes, John C, Borrow, Persephone
Publicado em 2013

Unique Acquisition of Cytotoxic T-Lymphocyte Escape Mutants in Infant Human Immunodeficiency Virus Type 1 Infection

Por Pillay, Thillagavathie, Zhang, Hua-Tang, Drijfhout, Jan W., Robinson, Nicola, Brown, Helen, Khan, Munira, Moodley, Jagadesa, Adhikari, Miriam, Pfafferott, Katja, Feeney, Margaret E., St. John, Anne, Holmes, Edward C., Coovadia, Hoosen M., Klenerman, Paul, Goulder, Philip J. R., Phillips, Rodney E.
Publicado em 2005

Fitness Cost of Escape Mutations in p24 Gag in Association with Control of Human Immunodeficiency Virus Type 1

Por Martinez-Picado, Javier, Prado, Julia G., Fry, Elizabeth E., Pfafferott, Katja, Leslie, Alasdair, Chetty, Senica, Thobakgale, Christina, Honeyborne, Isobel, Crawford, Hayley, Matthews, Philippa, Pillay, Tilly, Rousseau, Christine, Mullins, James I., Brander, Christian, Walker, Bruce D., Stuart, David I., Kiepiela, Photini, Goulder, Philip
Publicado em 2006

Viral Adaptation to Host Immune Responses Occurs in Chronic Hepatitis B Virus (HBV) Infection, and Adaptation Is Greatest in HBV e Antigen-Negative Disease

Por Desmond, Christopher P., Gaudieri, Silvana, James, Ian R., Pfafferott, Katja, Chopra, Abha, Lau, George K., Audsley, Jennifer, Day, Caroline, Chivers, Sarah, Gordon, Adam, Revill, Peter A., Bowden, Scott, Ayres, Anna, Desmond, Paul V., Thompson, Alexander J., Roberts, Stuart K., Locarnini, Stephen A., Mallal, Simon A., Lewin, Sharon R.
Publicado em 2012

Transmitted Virus Fitness and Host T Cell Responses Collectively Define Divergent Infection Outcomes in Two HIV-1 Recipients

Por Yue, Ling, Pfafferott, Katja J., Baalwa, Joshua, Conrod, Karen, Dong, Catherine C., Chui, Cecilia, Rong, Rong, Claiborne, Daniel T., Prince, Jessica L., Tang, Jianming, Ribeiro, Ruy M., Cormier, Emmanuel, Hahn, Beatrice H., Perelson, Alan S., Shaw, George M., Karita, Etienne, Gilmour, Jill, Goepfert, Paul, Derdeyn, Cynthia A., Allen, Susan A., Borrow, Persephone, Hunter, Eric
Publicado no PLoS Pathog (2015)

Immune Selection for Altered Antigen Processing Leads to Cytotoxic T Lymphocyte Escape in Chronic HIV-1 Infection

Por Draenert, Rika, Le Gall, Sylvie, Pfafferott, Katja J., Leslie, Alasdair J., Chetty, Polan, Brander, Christian, Holmes, Edward C., Chang, Shih-Chung, Feeney, Margaret E., Addo, Marylyn M., Ruiz, Lidia, Ramduth, Danni, Jeena, Prakash, Altfeld, Marcus, Thomas, Stephanie, Tang, Yanhua, Verrill, Cori L., Dixon, Catherine, Prado, Julia G., Kiepiela, Photini, Martinez-Picado, Javier, Walker, Bruce D., Goulder, Philip J.R.
Publicado em 2004

Transmission and accumulation of CTL escape variants drive negative associations between HIV polymorphisms and HLA

Por Leslie, Alasdair, Kavanagh, Daniel, Honeyborne, Isobella, Pfafferott, Katja, Edwards, Charles, Pillay, Tilly, Hilton, Louise, Thobakgale, Christina, Ramduth, Danni, Draenert, Rika, Le Gall, Sylvie, Luzzi, Graz, Edwards, Anne, Brander, Christian, Sewell, Andrew K., Moore, Sarah, Mullins, James, Moore, Corey, Mallal, Simon, Bhardwaj, Nina, Yusim, Karina, Phillips, Rodney, Klenerman, Paul, Korber, Bette, Kiepiela, Photini, Walker, Bruce, Goulder, Philip
Publicado em 2005

Mutually Exclusive T-Cell Receptor Induction and Differential Susceptibility to Human Immunodeficiency Virus Type 1 Mutational Escape Associated with a Two-Amino-Acid Difference be...

Por Yu, Xu G., Lichterfeld, Mathias, Chetty, Senica, Williams, Katie L., Mui, Stanley K., Miura, Toshiyuki, Frahm, Nicole, Feeney, Margaret E., Tang, Yanhua, Pereyra, Florencia, LaBute, Montiago X., Pfafferott, Katja, Leslie, Alisdair, Crawford, Hayley, Allgaier, Rachel, Hildebrand, William, Kaslow, Richard, Brander, Christian, Allen, Todd M., Rosenberg, Eric S., Kiepiela, Photini, Vajpayee, Madhu, Goepfert, Paul A., Altfeld, Marcus, Goulder, Philip J. R., Walker, Bruce D.
Publicado em 2007

Adaptation of HIV-1 to human leukocyte antigen class I

Por Kawashima, Yuka, Pfafferott, Katja, Frater, John, Matthews, Philippa, Payne, Rebecca, Addo, Marylyn, Gatanaga, Hiroyuki, Fujiwara, Mamoru, Hachiya, Atsuko, Koizumi, Hirokazu, Kuse, Nozomi, Oka, Shinichi, Duda, Anna, Prendergast, Andrew, Crawford, Hayley, Leslie, Alasdair, Brumme, Zabrina, Brumme, Chanson, Allen, Todd, Brander, Christian, Kaslow, Richard, Tang, James, Hunter, Eric, Allen, Susan, Mulenga, Joseph, Branch, Songee, Roach, Tim, John, Mina, Mallal, Simon, Ogwu, Anthony, Shapiro, Roger, Prado, Julia G., Fidler, Sarah, Weber, Jonathan, Pybus, Oliver G., Klenerman, Paul, Ndung’u, Thumbi, Phillips, Rodney, Heckerman, David, Harrigan, P. Richard, Walker, Bruce D., Takiguchi, Masafumi, Goulder, Philip
Publicado em 2009