Understanding dynamics using sensitivity analysis: caveat and solution

по Perumal, Thanneer M, Gunawan, Rudiyanto
Опубликовано 2011

Detecting cellular reprogramming determinants by differential stability analysis of gene regulatory networks

по Crespo, Isaac, Perumal, Thanneer M, Jurkowski, Wiktor, del Sol, Antonio
Опубликовано 2013

Identifying and ranking potential driver genes of Alzheimer’s disease using multiview evidence aggregation

по Mukherjee, Sumit, Perumal, Thanneer M, Daily, Kenneth, Sieberts, Solveig K, Omberg, Larsson, Preuss, Christoph, Carter, Gregory W, Mangravite, Lara M, Logsdon, Benjamin A
Опубликовано в: Bioinformatics (2019)

Detecting the impact of subject characteristics on machine learning-based diagnostic applications

по Chaibub Neto, Elias, Pratap, Abhishek, Perumal, Thanneer M., Tummalacherla, Meghasyam, Snyder, Phil, Bot, Brian M., Trister, Andrew D., Friend, Stephen H., Mangravite, Lara, Omberg, Larsson
Опубликовано в: NPJ Digit Med (2019)

TRIM32 modulates pluripotency entry and exit by directly regulating Oct4 stability

по Bahnassawy, Lamia’a, Perumal, Thanneer M., Gonzalez-Cano, Laura, Hillje, Anna-Lena, Taher, Leila, Makalowski, Wojciech, Suzuki, Yutaka, Fuellen, Georg, Sol, Antonio del, Schwamborn, Jens Christian
Опубликовано в: Sci Rep (2015)

A novel systems biology approach to evaluate mouse models of late-onset Alzheimer’s disease

по Preuss, Christoph, Pandey, Ravi, Piazza, Erin, Fine, Alexander, Uyar, Asli, Perumal, Thanneer, Garceau, Dylan, Kotredes, Kevin P., Williams, Harriet, Mangravite, Lara M., Lamb, Bruce T., Oblak, Adrian L., Howell, Gareth R., Sasner, Michael, Logsdon, Benjamin A., Carter, Gregory W.
Опубликовано в: Mol Neurodegener (2020)

Integrating Pathways of Parkinson's Disease in a Molecular Interaction Map

по Fujita, Kazuhiro A., Ostaszewski, Marek, Matsuoka, Yukiko, Ghosh, Samik, Glaab, Enrico, Trefois, Christophe, Crespo, Isaac, Perumal, Thanneer M., Jurkowski, Wiktor, Antony, Paul M. A., Diederich, Nico, Buttini, Manuel, Kodama, Akihiko, Satagopam, Venkata P., Eifes, Serge, del Sol, Antonio, Schneider, Reinhard, Kitano, Hiroaki, Balling, Rudi
Опубликовано 2013

Landscape of Conditional eQTL in Dorsolateral Prefrontal Cortex and Co-localization with Schizophrenia GWAS

по Dobbyn, Amanda, Huckins, Laura M., Boocock, James, Sloofman, Laura G., Glicksberg, Benjamin S., Giambartolomei, Claudia, Hoffman, Gabriel E., Perumal, Thanneer M., Girdhar, Kiran, Jiang, Yan, Raj, Towfique, Ruderfer, Douglas M., Kramer, Robin S., Pinto, Dalila, Akbarian, Schahram, Roussos, Panos, Domenici, Enrico, Devlin, Bernie, Sklar, Pamela, Stahl, Eli A., Sieberts, Solveig K.
Опубликовано в: Am J Hum Genet (2018)

Large eQTL meta-analysis reveals differing patterns between cerebral cortical and cerebellar brain regions

по Sieberts, Solveig K., Perumal, Thanneer M., Carrasquillo, Minerva M., Allen, Mariet, Reddy, Joseph S., Hoffman, Gabriel E., Dang, Kristen K., Calley, John, Ebert, Philip J., Eddy, James, Wang, Xue, Greenwood, Anna K., Mostafavi, Sara, Omberg, Larsson, Peters, Mette A., Logsdon, Benjamin A., De Jager, Philip L., Ertekin-Taner, Nilüfer, Mangravite, Lara M.
Опубликовано в: Sci Data (2020)

Molecular, phenotypic, and sample-associated data to describe pluripotent stem cell lines and derivatives

по Daily, Kenneth, Ho Sui, Shannan J., Schriml, Lynn M., Dexheimer, Phillip J., Salomonis, Nathan, Schroll, Robin, Bush, Stacy, Keddache, Mehdi, Mayhew, Christopher, Lotia, Samad, Perumal, Thanneer M., Dang, Kristen, Pantano, Lorena, Pico, Alexander R., Grassman, Elke, Nordling, Diana, Hide, Winston, Hatzopoulos, Antonis K., Malik, Punam, Cancelas, Jose A., Lutzko, Carolyn, Aronow, Bruce J., Omberg, Larsson
Опубликовано в: Sci Data (2017)

Identifying drug targets for neurological and psychiatric disease via genetics and the brain transcriptome

по Baird, Denis A., Liu, Jimmy Z., Zheng, Jie, Sieberts, Solveig K., Perumal, Thanneer, Elsworth, Benjamin, Richardson, Tom G., Chen, Chia-Yen, Carrasquillo, Minerva M., Allen, Mariet, Reddy, Joseph S., De Jager, Philip L., Ertekin-Taner, Nilufer, Mangravite, Lara M., Logsdon, Ben, Estrada, Karol, Haycock, Philip C., Hemani, Gibran, Runz, Heiko, Smith, George Davey, Gaunt, Tom R.
Опубликовано в: PLoS Genet (2021)

Unsupervised analysis of transcriptomics in bacterial sepsis across multiple datasets reveals three robust clusters

по Sweeney, Timothy E, Azad, Tej D, Donato, Michele, Haynes, Winston A, Perumal, Thanneer M, Henao, Ricardo, Bermejo-Martin, Jesús F, Almansa, Raquel, Tamayo, Eduardo, Howrylak, Judith A, Choi, Augustine, Parnell, Grant P, Tang, Benjamin, Nichols, Marshall, Woods, Christopher W, Ginsburg, Geoffrey S, Kingsmore, Stephen F, Omberg, Larsson, Mangravite, Lara M, Wong, Hector R, Tsalik, Ephraim L, Langley, Raymond J, Khatri, Purvesh
Опубликовано в: Crit Care Med (2018)

A community approach to mortality prediction in sepsis via gene expression analysis

по Sweeney, Timothy E., Perumal, Thanneer M., Henao, Ricardo, Nichols, Marshall, Howrylak, Judith A., Choi, Augustine M., Bermejo-Martin, Jesús F., Almansa, Raquel, Tamayo, Eduardo, Davenport, Emma E., Burnham, Katie L., Hinds, Charles J., Knight, Julian C., Woods, Christopher W., Kingsmore, Stephen F., Ginsburg, Geoffrey S., Wong, Hector R., Parnell, Grant P., Tang, Benjamin, Moldawer, Lyle L., Moore, Frederick E., Omberg, Larsson, Khatri, Purvesh, Tsalik, Ephraim L., Mangravite, Lara M., Langley, Raymond J.
Опубликовано в: Nat Commun (2018)

Crowdsourcing digital health measures to predict Parkinson’s disease severity: the Parkinson’s Disease Digital Biomarker DREAM Challenge

по Sieberts, Solveig K., Schaff, Jennifer, Duda, Marlena, Pataki, Bálint Ármin, Sun, Ming, Snyder, Phil, Daneault, Jean-Francois, Parisi, Federico, Costante, Gianluca, Rubin, Udi, Banda, Peter, Chae, Yooree, Chaibub Neto, Elias, Dorsey, E. Ray, Aydın, Zafer, Chen, Aipeng, Elo, Laura L., Espino, Carlos, Glaab, Enrico, Goan, Ethan, Golabchi, Fatemeh Noushin, Görmez, Yasin, Jaakkola, Maria K., Jonnagaddala, Jitendra, Klén, Riku, Li, Dongmei, McDaniel, Christian, Perrin, Dimitri, Perumal, Thanneer M., Rad, Nastaran Mohammadian, Rainaldi, Erin, Sapienza, Stefano, Schwab, Patrick, Shokhirev, Nikolai, Venäläinen, Mikko S., Vergara-Diaz, Gloria, Zhang, Yuqian, Wang, Yuanjia, Guan, Yuanfang, Brunner, Daniela, Bonato, Paolo, Mangravite, Lara M., Omberg, Larsson
Опубликовано в: NPJ Digit Med (2021)

Gene Expression Elucidates Functional Impact of Polygenic Risk for Schizophrenia

по Fromer, Menachem, Roussos, Panos, Sieberts, Solveig K, Johnson, Jessica S, Kavanagh, David H, Perumal, Thanneer M, Ruderfer, Douglas M, Oh, Edwin C, Topol, Aaron, Shah, Hardik R, Klei, Lambertus L, Kramer, Robin, Pinto, Dalila, Gümüş, Zeynep H, Cicek, A. Ercument, Dang, Kristen K, Browne, Andrew, Lu, Cong, Xie, Lu, Readhead, Ben, Stahl, Eli A, Parvizi, Mahsa, Hamamsy, Tymor, Fullard, John F, Wang, Ying-Chih, Mahajan, Milind C, Derry, Jonathan M J, Dudley, Joel, Hemby, Scott E, Logsdon, Benjamin A, Talbot, Konrad, Raj, Towfique, Bennett, David A, De Jager, Philip L, Zhu, Jun, Zhang, Bin, Sullivan, Patrick F, Chess, Andrew, Purcell, Shaun M, Shinobu, Leslie A, Mangravite, Lara M, Toyoshiba, Hiroyoshi, Gur, Raquel E, Hahn, Chang-Gyu, Lewis, David A, Haroutunian, Vahram, Peters, Mette A, Lipska, Barbara K, Buxbaum, Joseph D, Schadt, Eric E, Hirai, Keisuke, Roeder, Kathryn, Brennand, Kristen J, Katsanis, Nicholas, Domenici, Enrico, Devlin, Bernie, Sklar, Pamela
Опубликовано в: Nat Neurosci (2016)

Meta-Analysis of the Alzheimer’s Disease Human Brain Transcriptome and Functional Dissection in Mouse Models

по Wan, Ying-Wooi, Al-Ouran, Rami, Mangleburg, Carl G., Perumal, Thanneer M., Lee, Tom V., Allison, Katherine, Swarup, Vivek, Funk, Cory C., Gaiteri, Chris, Allen, Mariet, Wang, Minghui, Neuner, Sarah M., Kaczorowski, Catherine C., Philip, Vivek M., Howell, Gareth R., Martini-Stoica, Heidi, Zheng, Hui, Mei, Hongkang, Zhong, Xiaoyan, Kim, Jungwoo Wren, Dawson, Valina L., Dawson, Ted M., Pao, Ping-Chieh, Tsai, Li-Huei, Haure-Mirande, Jean-Vianney, Ehrlich, Michelle E., Chakrabarty, Paramita, Levites, Yona, Wang, Xue, Dammer, Eric B., Srivastava, Gyan, Mukherjee, Sumit, Sieberts, Solveig K., Omberg, Larsson, Dang, Kristen D., Eddy, James A., Snyder, Phil, Chae, Yooree, Amberkar, Sandeep, Wei, Wenbin, Hide, Winston, Preuss, Christoph, Ergun, Ayla, Ebert, Phillip J., Airey, David C., Mostafavi, Sara, Yu, Lei, Klein, Hans-Ulrich, Carter, Gregory W., Collier, David A., Golde, Todd E., Levey, Allan I., Bennett, David A., Estrada, Karol, Townsend, T. Matthew, Zhang, Bin, Schadt, Eric, De Jager, Philip L., Price, Nathan D., Ertekin-Taner, Nilüfer, Liu, Zhandong, Shulman, Joshua M., Mangravite, Lara M., Logsdon, Benjamin A.
Опубликовано в: Cell Rep (2020)