Manifold Based Optimization for Single-Cell 3D Genome Reconstruction

Por Paulsen, Jonas, Gramstad, Odin, Collas, Philippe
Publicado no PLoS Comput Biol (2015)

4D nucleomes in single cells: what can computational modeling reveal about spatial chromatin conformation?

Por Sekelja, Monika, Paulsen, Jonas, Collas, Philippe
Publicado no Genome Biol (2016)

Alkbh1 and Tzfp repress a non-repeat piRNA cluster in pachytene spermatocytes

Por Nordstrand, Line M., Furu, Kari, Paulsen, Jonas, Rognes, Torbjørn, Klungland, Arne
Publicado em 2012

A statistical model of ChIA-PET data for accurate detection of chromatin 3D interactions

Por Paulsen, Jonas, Rødland, Einar A., Holden, Lars, Holden, Marit, Hovig, Eivind
Publicado em 2014

Hi-C-constrained physical models of human chromosomes recover functionally-related properties of genome organization

Por Di Stefano, Marco, Paulsen, Jonas, Lien, Tonje G., Hovig, Eivind, Micheletti, Cristian
Publicado no Sci Rep (2016)

Galaxy Portal: interacting with the galaxy platform through mobile devices

Por Børnich, Claus, Grytten, Ivar, Hovig, Eivind, Paulsen, Jonas, Čech, Martin, Sandve, Geir Kjetil
Publicado no Bioinformatics (2016)

HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization

Por Paulsen, Jonas, Sandve, Geir Kjetil, Gundersen, Sveinung, Lien, Tonje G., Trengereid, Kai, Hovig, Eivind
Publicado em 2014

Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements

Por Paulsen, Jonas, Lien, Tonje G., Sandve, Geir Kjetil, Holden, Lars, Borgan, Ørnulf, Glad, Ingrid K., Hovig, Eivind
Publicado em 2013

Potentials of Mean Force for Protein Structure Prediction Vindicated, Formalized and Generalized

Por Hamelryck, Thomas, Borg, Mikael, Paluszewski, Martin, Paulsen, Jonas, Frellsen, Jes, Andreetta, Christian, Boomsma, Wouter, Bottaro, Sandro, Ferkinghoff-Borg, Jesper
Publicado em 2010

Chrom3D: three-dimensional genome modeling from Hi-C and nuclear lamin-genome contacts

Por Paulsen, Jonas, Sekelja, Monika, Oldenburg, Anja R., Barateau, Alice, Briand, Nolwenn, Delbarre, Erwan, Shah, Akshay, Sørensen, Anita L., Vigouroux, Corinne, Buendia, Brigitte, Collas, Philippe
Publicado no Genome Biol (2017)

The Genomic HyperBrowser: an analysis web server for genome-scale data

Por Sandve, Geir K., Gundersen, Sveinung, Johansen, Morten, Glad, Ingrid K., Gunathasan, Krishanthi, Holden, Lars, Holden, Marit, Liestøl, Knut, Nygård, Ståle, Nygaard, Vegard, Paulsen, Jonas, Rydbeck, Halfdan, Trengereid, Kai, Clancy, Trevor, Drabløs, Finn, Ferkingstad, Egil, Kalaš, Matúš, Lien, Tonje, Rye, Morten B., Frigessi, Arnoldo, Hovig, Eivind
Publicado em 2013

The genome sequence of Atlantic cod reveals a unique immune system

Por Star, Bastiaan, Nederbragt, Alexander J., Jentoft, Sissel, Grimholt, Unni, Malmstrøm, Martin, Gregers, Tone F., Rounge, Trine B., Paulsen, Jonas, Solbakken, Monica H., Sharma, Animesh, Wetten, Ola F., Lanzén, Anders, Winer, Roger, Knight, James, Vogel, Jan-Hinnerk, Aken, Bronwen, Andersen, Øivind, Lagesen, Karin, Tooming-Klunderud, Ave, Edvardsen, Rolf B., Tina, Kirubakaran G., Espelund, Mari, Nepal, Chirag, Previti, Christopher, Karlsen, Bård Ove, Moum, Truls, Skage, Morten, Berg, Paul R., Gjøen, Tor, Kuhl, Heiner, Thorsen, Jim, Malde, Ketil, Reinhardt, Richard, Du, Lei, Johansen, Steinar D., Searle, Steve, Lien, Sigbjørn, Nilsen, Frank, Jonassen, Inge, Omholt, Stig W., Stenseth, Nils Chr., Jakobsen, Kjetill S.
Publicado em 2011