Space, time and microdiversity: towards a resolution revolution in microbiomics

по Paoli, Lucas, Sunagawa, Shinichi
Опубликовано в: Environ Microbiol Rep (2020)

metaSNV: A tool for metagenomic strain level analysis

по Costea, Paul Igor, Munch, Robin, Coelho, Luis Pedro, Paoli, Lucas, Sunagawa, Shinichi, Bork, Peer
Опубликовано в: PLoS One (2017)

Principles of plastid reductive evolution illuminated by nonphotosynthetic chrysophytes

по Dorrell, Richard G., Azuma, Tomonori, Nomura, Mami, Audren de Kerdrel, Guillemette, Paoli, Lucas, Yang, Shanshan, Bowler, Chris, Ishii, Ken-ichiro, Miyashita, Hideaki, Gile, Gillian H., Kamikawa, Ryoma
Опубликовано в: Proc Natl Acad Sci U S A (2019)

Plastid Transcript Editing across Dinoflagellate Lineages Shows Lineage-Specific Application but Conserved Trends

по Klinger, Christen M, Paoli, Lucas, Newby, Robert J, Wang, Matthew Yu-Wei, Carroll, Hyrum D, Leblond, Jeffrey D, Howe, Christopher J, Dacks, Joel B, Bowler, Chris, Cahoon, Aubery Bruce, Dorrell, Richard G, Richardson, Elisabeth
Опубликовано в: Genome Biol Evol (2018)

proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes

по Mende, Daniel R, Letunic, Ivica, Maistrenko, Oleksandr M, Schmidt, Thomas S B, Milanese, Alessio, Paoli, Lucas, Hernández-Plaza, Ana, Orakov, Askarbek N, Forslund, Sofia K, Sunagawa, Shinichi, Zeller, Georg, Huerta-Cepas, Jaime, Coelho, Luis Pedro, Bork, Peer
Опубликовано в: Nucleic Acids Res (2020)

Microbial abundance, activity and population genomic profiling with mOTUs2

по Milanese, Alessio, Mende, Daniel R, Paoli, Lucas, Salazar, Guillem, Ruscheweyh, Hans-Joachim, Cuenca, Miguelangel, Hingamp, Pascal, Alves, Renato, Costea, Paul I, Coelho, Luis Pedro, Schmidt, Thomas S. B., Almeida, Alexandre, Mitchell, Alex L, Finn, Robert D., Huerta-Cepas, Jaime, Bork, Peer, Zeller, Georg, Sunagawa, Shinichi
Опубликовано в: Nat Commun (2019)

Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities

по Acinas, Silvia G., Sánchez, Pablo, Salazar, Guillem, Cornejo-Castillo, Francisco M., Sebastián, Marta, Logares, Ramiro, Royo-Llonch, Marta, Paoli, Lucas, Sunagawa, Shinichi, Hingamp, Pascal, Ogata, Hiroyuki, Lima-Mendez, Gipsi, Roux, Simon, González, José M., Arrieta, Jesús M., Alam, Intikhab S., Kamau, Allan, Bowler, Chris, Raes, Jeroen, Pesant, Stéphane, Bork, Peer, Agustí, Susana, Gojobori, Takashi, Vaqué, Dolors, Sullivan, Matthew B., Pedrós-Alió, Carlos, Massana, Ramon, Duarte, Carlos M., Gasol, Josep M.
Опубликовано в: Commun Biol (2021)

Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome

по Salazar, Guillem, Paoli, Lucas, Alberti, Adriana, Huerta-Cepas, Jaime, Ruscheweyh, Hans-Joachim, Cuenca, Miguelangel, Field, Christopher M., Coelho, Luis Pedro, Cruaud, Corinne, Engelen, Stefan, Gregory, Ann C., Labadie, Karine, Marec, Claudie, Pelletier, Eric, Royo-Llonch, Marta, Roux, Simon, Sánchez, Pablo, Uehara, Hideya, Zayed, Ahmed A., Zeller, Georg, Carmichael, Margaux, Dimier, Céline, Ferland, Joannie, Kandels, Stefanie, Picheral, Marc, Pisarev, Sergey, Poulain, Julie, Acinas, Silvia G., Babin, Marcel, Bork, Peer, Bowler, Chris, de Vargas, Colomban, Guidi, Lionel, Hingamp, Pascal, Iudicone, Daniele, Karp-Boss, Lee, Karsenti, Eric, Ogata, Hiroyuki, Pesant, Stephane, Speich, Sabrina, Sullivan, Matthew B., Wincker, Patrick, Sunagawa, Shinichi
Опубликовано в: Cell (2019)