Space, time and microdiversity: towards a resolution revolution in microbiomics

מאת Paoli, Lucas, Sunagawa, Shinichi
הוצא לאור ב Environ Microbiol Rep (2020)

metaSNV: A tool for metagenomic strain level analysis

מאת Costea, Paul Igor, Munch, Robin, Coelho, Luis Pedro, Paoli, Lucas, Sunagawa, Shinichi, Bork, Peer
הוצא לאור ב PLoS One (2017)

Principles of plastid reductive evolution illuminated by nonphotosynthetic chrysophytes

מאת Dorrell, Richard G., Azuma, Tomonori, Nomura, Mami, Audren de Kerdrel, Guillemette, Paoli, Lucas, Yang, Shanshan, Bowler, Chris, Ishii, Ken-ichiro, Miyashita, Hideaki, Gile, Gillian H., Kamikawa, Ryoma
הוצא לאור ב Proc Natl Acad Sci U S A (2019)

Plastid Transcript Editing across Dinoflagellate Lineages Shows Lineage-Specific Application but Conserved Trends

מאת Klinger, Christen M, Paoli, Lucas, Newby, Robert J, Wang, Matthew Yu-Wei, Carroll, Hyrum D, Leblond, Jeffrey D, Howe, Christopher J, Dacks, Joel B, Bowler, Chris, Cahoon, Aubery Bruce, Dorrell, Richard G, Richardson, Elisabeth
הוצא לאור ב Genome Biol Evol (2018)

proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes

מאת Mende, Daniel R, Letunic, Ivica, Maistrenko, Oleksandr M, Schmidt, Thomas S B, Milanese, Alessio, Paoli, Lucas, Hernández-Plaza, Ana, Orakov, Askarbek N, Forslund, Sofia K, Sunagawa, Shinichi, Zeller, Georg, Huerta-Cepas, Jaime, Coelho, Luis Pedro, Bork, Peer
הוצא לאור ב Nucleic Acids Res (2020)

Microbial abundance, activity and population genomic profiling with mOTUs2

מאת Milanese, Alessio, Mende, Daniel R, Paoli, Lucas, Salazar, Guillem, Ruscheweyh, Hans-Joachim, Cuenca, Miguelangel, Hingamp, Pascal, Alves, Renato, Costea, Paul I, Coelho, Luis Pedro, Schmidt, Thomas S. B., Almeida, Alexandre, Mitchell, Alex L, Finn, Robert D., Huerta-Cepas, Jaime, Bork, Peer, Zeller, Georg, Sunagawa, Shinichi
הוצא לאור ב Nat Commun (2019)

Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities

מאת Acinas, Silvia G., Sánchez, Pablo, Salazar, Guillem, Cornejo-Castillo, Francisco M., Sebastián, Marta, Logares, Ramiro, Royo-Llonch, Marta, Paoli, Lucas, Sunagawa, Shinichi, Hingamp, Pascal, Ogata, Hiroyuki, Lima-Mendez, Gipsi, Roux, Simon, González, José M., Arrieta, Jesús M., Alam, Intikhab S., Kamau, Allan, Bowler, Chris, Raes, Jeroen, Pesant, Stéphane, Bork, Peer, Agustí, Susana, Gojobori, Takashi, Vaqué, Dolors, Sullivan, Matthew B., Pedrós-Alió, Carlos, Massana, Ramon, Duarte, Carlos M., Gasol, Josep M.
הוצא לאור ב Commun Biol (2021)

Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome

מאת Salazar, Guillem, Paoli, Lucas, Alberti, Adriana, Huerta-Cepas, Jaime, Ruscheweyh, Hans-Joachim, Cuenca, Miguelangel, Field, Christopher M., Coelho, Luis Pedro, Cruaud, Corinne, Engelen, Stefan, Gregory, Ann C., Labadie, Karine, Marec, Claudie, Pelletier, Eric, Royo-Llonch, Marta, Roux, Simon, Sánchez, Pablo, Uehara, Hideya, Zayed, Ahmed A., Zeller, Georg, Carmichael, Margaux, Dimier, Céline, Ferland, Joannie, Kandels, Stefanie, Picheral, Marc, Pisarev, Sergey, Poulain, Julie, Acinas, Silvia G., Babin, Marcel, Bork, Peer, Bowler, Chris, de Vargas, Colomban, Guidi, Lionel, Hingamp, Pascal, Iudicone, Daniele, Karp-Boss, Lee, Karsenti, Eric, Ogata, Hiroyuki, Pesant, Stephane, Speich, Sabrina, Sullivan, Matthew B., Wincker, Patrick, Sunagawa, Shinichi
הוצא לאור ב Cell (2019)