Space, time and microdiversity: towards a resolution revolution in microbiomics

por Paoli, Lucas, Sunagawa, Shinichi
Publicado en Environ Microbiol Rep (2020)

metaSNV: A tool for metagenomic strain level analysis

por Costea, Paul Igor, Munch, Robin, Coelho, Luis Pedro, Paoli, Lucas, Sunagawa, Shinichi, Bork, Peer
Publicado en PLoS One (2017)

Principles of plastid reductive evolution illuminated by nonphotosynthetic chrysophytes

por Dorrell, Richard G., Azuma, Tomonori, Nomura, Mami, Audren de Kerdrel, Guillemette, Paoli, Lucas, Yang, Shanshan, Bowler, Chris, Ishii, Ken-ichiro, Miyashita, Hideaki, Gile, Gillian H., Kamikawa, Ryoma
Publicado en Proc Natl Acad Sci U S A (2019)

Plastid Transcript Editing across Dinoflagellate Lineages Shows Lineage-Specific Application but Conserved Trends

por Klinger, Christen M, Paoli, Lucas, Newby, Robert J, Wang, Matthew Yu-Wei, Carroll, Hyrum D, Leblond, Jeffrey D, Howe, Christopher J, Dacks, Joel B, Bowler, Chris, Cahoon, Aubery Bruce, Dorrell, Richard G, Richardson, Elisabeth
Publicado en Genome Biol Evol (2018)

proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes

por Mende, Daniel R, Letunic, Ivica, Maistrenko, Oleksandr M, Schmidt, Thomas S B, Milanese, Alessio, Paoli, Lucas, Hernández-Plaza, Ana, Orakov, Askarbek N, Forslund, Sofia K, Sunagawa, Shinichi, Zeller, Georg, Huerta-Cepas, Jaime, Coelho, Luis Pedro, Bork, Peer
Publicado en Nucleic Acids Res (2020)

Microbial abundance, activity and population genomic profiling with mOTUs2

por Milanese, Alessio, Mende, Daniel R, Paoli, Lucas, Salazar, Guillem, Ruscheweyh, Hans-Joachim, Cuenca, Miguelangel, Hingamp, Pascal, Alves, Renato, Costea, Paul I, Coelho, Luis Pedro, Schmidt, Thomas S. B., Almeida, Alexandre, Mitchell, Alex L, Finn, Robert D., Huerta-Cepas, Jaime, Bork, Peer, Zeller, Georg, Sunagawa, Shinichi
Publicado en Nat Commun (2019)

Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities

por Acinas, Silvia G., Sánchez, Pablo, Salazar, Guillem, Cornejo-Castillo, Francisco M., Sebastián, Marta, Logares, Ramiro, Royo-Llonch, Marta, Paoli, Lucas, Sunagawa, Shinichi, Hingamp, Pascal, Ogata, Hiroyuki, Lima-Mendez, Gipsi, Roux, Simon, González, José M., Arrieta, Jesús M., Alam, Intikhab S., Kamau, Allan, Bowler, Chris, Raes, Jeroen, Pesant, Stéphane, Bork, Peer, Agustí, Susana, Gojobori, Takashi, Vaqué, Dolors, Sullivan, Matthew B., Pedrós-Alió, Carlos, Massana, Ramon, Duarte, Carlos M., Gasol, Josep M.
Publicado en Commun Biol (2021)

Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome

por Salazar, Guillem, Paoli, Lucas, Alberti, Adriana, Huerta-Cepas, Jaime, Ruscheweyh, Hans-Joachim, Cuenca, Miguelangel, Field, Christopher M., Coelho, Luis Pedro, Cruaud, Corinne, Engelen, Stefan, Gregory, Ann C., Labadie, Karine, Marec, Claudie, Pelletier, Eric, Royo-Llonch, Marta, Roux, Simon, Sánchez, Pablo, Uehara, Hideya, Zayed, Ahmed A., Zeller, Georg, Carmichael, Margaux, Dimier, Céline, Ferland, Joannie, Kandels, Stefanie, Picheral, Marc, Pisarev, Sergey, Poulain, Julie, Acinas, Silvia G., Babin, Marcel, Bork, Peer, Bowler, Chris, de Vargas, Colomban, Guidi, Lionel, Hingamp, Pascal, Iudicone, Daniele, Karp-Boss, Lee, Karsenti, Eric, Ogata, Hiroyuki, Pesant, Stephane, Speich, Sabrina, Sullivan, Matthew B., Wincker, Patrick, Sunagawa, Shinichi
Publicado en Cell (2019)