Interactive metagenomic visualization in a Web browser

di Ondov, Brian D, Bergman, Nicholas H, Phillippy, Adam M
Pubblicazione 2011

Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications

di Ondov, Brian D., Varadarajan, Anjana, Passalacqua, Karla D., Bergman, Nicholas H.
Pubblicazione 2008

The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes

di Treangen, Todd J, Ondov, Brian D, Koren, Sergey, Phillippy, Adam M
Pubblicato in Genome Biol (2014)

BLAST-based validation of metagenomic sequence assignments

di Bazinet, Adam L., Ondov, Brian D., Sommer, Daniel D., Ratnayake, Shashikala
Pubblicato in PeerJ (2018)

An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System

di Ondov, Brian D., Cochran, Charles, Landers, Mark, Meredith, Gavin D., Dudas, Miroslav, Bergman, Nicholas H.
Pubblicazione 2010

Structure and Complexity of a Bacterial Transcriptome

di Passalacqua, Karla D., Varadarajan, Anjana, Ondov, Brian D., Okou, David T., Zwick, Michael E., Bergman, Nicholas H.
Pubblicazione 2009

Strand-Specific RNA-Seq Reveals Ordered Patterns of Sense and Antisense Transcription in Bacillus anthracis

di Passalacqua, Karla D., Varadarajan, Anjana, Weist, Charlotte, Ondov, Brian D., Byrd, Benjamin, Read, Timothy D., Bergman, Nicholas H.
Pubblicazione 2012

Mash Screen: high-throughput sequence containment estimation for genome discovery

di Ondov, Brian D., Starrett, Gabriel J., Sappington, Anna, Kostic, Aleksandra, Koren, Sergey, Buck, Christopher B., Phillippy, Adam M.
Pubblicato in Genome Biol (2019)

Mash: fast genome and metagenome distance estimation using MinHash

di Ondov, Brian D., Treangen, Todd J., Melsted, Páll, Mallonee, Adam B., Bergman, Nicholas H., Koren, Sergey, Phillippy, Adam M.
Pubblicato in Genome Biol (2016)

Genome Sequence of the Attenuated Carbosap Vaccine Strain of Bacillus anthracis

di Harrington, Robin, Ondov, Brian D., Radune, Diana, Friss, Mary Beth, Klubnik, Joy, Diviak, Lynn, Hnath, Jonathan, Cendrowski, Stephen R., Blank, Thomas E., Karaolis, David, Friedlander, Arthur M., Burans, James P., Rosovitz, M. J., Treangen, Todd, Phillippy, Adam M., Bergman, Nicholas H.
Pubblicazione 2013

Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College P...

di Meisel, Jacquelyn S., Nasko, Daniel J., Brubach, Brian, Cepeda-Espinoza, Victoria, Chopyk, Jessica, Corrada-Bravo, Héctor, Fedarko, Marcus, Ghurye, Jay, Javkar, Kiran, Olson, Nathan D., Shah, Nidhi, Allard, Sarah M., Bazinet, Adam L., Bergman, Nicholas H., Brown, Alexis, Caporaso, J. Gregory, Conlan, Sean, DiRuggiero, Jocelyne, Forry, Samuel P., Hasan, Nur A., Kralj, Jason, Luethy, Paul M., Milton, Donald K., Ondov, Brian D., Preheim, Sarah, Ratnayake, Shashikala, Rogers, Stephanie M., Rosovitz, M. J., Sakowski, Eric G., Schliebs, Nils Oliver, Sommer, Daniel D., Ternus, Krista L., Uritskiy, Gherman, Zhang, Sean X., Pop, Mihai, Treangen, Todd J.
Pubblicato in Microbiome (2018)