The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome

Por Leipzig, Jeremy, Pevzner, Pavel, Heber, Steffen
Publicado em 2004

A Next-Generation Sequencing Approach to Study the Transcriptomic Changes During the Differentiation of Physarum at the Single-Cell Level

Por Barrantes, Israel, Leipzig, Jeremy, Marwan, Wolfgang
Publicado em 2012

Selection of Target Sites for Mobile DNA Integration in the Human Genome

Por Berry, Charles, Hannenhalli, Sridhar, Leipzig, Jeremy, Bushman, Frederic D
Publicado em 2006

Genome-Wide Analysis of Interferon Regulatory Factor I Binding in Primary Human Monocytes

Por Shi, Lihua, Perin, Juan C., Leipzig, Jeremy, Zhang, Zhe, Sullivan, Kathleen E.
Publicado em 2011

Integration Targeting by Avian Sarcoma-Leukosis Virus and Human Immunodeficiency Virus in the Chicken Genome

Por Barr, Stephen D., Leipzig, Jeremy, Shinn, Paul, Ecker, Joe R., Bushman, Frederic D.
Publicado em 2005

HIV integration site selection: Analysis by massively parallel pyrosequencing reveals association with epigenetic modifications

Por Wang, Gary P., Ciuffi, Angela, Leipzig, Jeremy, Berry, Charles C., Bushman, Frederic D.
Publicado em 2007

HTLV-1 Integration into Transcriptionally Active Genomic Regions Is Associated with Proviral Expression and with HAM/TSP

Por Meekings, Kiran N., Leipzig, Jeremy, Bushman, Frederic D., Taylor, Graham P., Bangham, Charles R. M.
Publicado em 2008

DNA bar coding and pyrosequencing to identify rare HIV drug resistance mutations

Por Hoffmann, Christian, Minkah, Nana, Leipzig, Jeremy, Wang, Gary, Arens, Max Q., Tebas, Pablo, Bushman, Frederic D.
Publicado em 2007

Peripheral Blood Mitochondrial DNA as a Biomarker of Cerebral Mitochondrial Dysfunction following Traumatic Brain Injury in a Porcine Model

Por Kilbaugh, Todd J., Lvova, Maria, Karlsson, Michael, Zhang, Zhe, Leipzig, Jeremy, Wallace, Douglas C., Margulies, Susan S.
Publicado no PLoS One (2015)

mtDNA Variation and Analysis Using MITOMAP and MITOMASTER

Por Lott, Marie T., Leipzig, Jeremy N., Derbeneva, Olga, Xie, H. Michael, Chalkia, Dimitra, Sarmady, Mahdi, Procaccio, Vincent, Wallace, Douglas C.
Publicado no Curr Protoc Bioinformatics (2013)

Efficient digest of high-throughput sequencing data in a reproducible report

Por Zhang, Zhe, Leipzig, Jeremy, Sasson, Ariella, Yu, Angela M, Perin, Juan C, Xie, Hongbo M, Sarmady, Mahdi, Warren, Patrick V, White, Peter S
Publicado em 2013

Phy-Mer: a novel alignment-free and reference-independent mitochondrial haplogroup classifier

Por Navarro-Gomez, Daniel, Leipzig, Jeremy, Shen, Lishuang, Lott, Marie, Stassen, Alphons P.M., Wallace, Douglas C., Wiggs, Janey L., Falk, Marni J., van Oven, Mannis, Gai, Xiaowu
Publicado no Bioinformatics (2015)

Mitochondrial energy deficiency leads to hyperproliferation of skeletal muscle mitochondria and enhanced insulin sensitivity

Por Morrow, Ryan M., Picard, Martin, Derbeneva, Olga, Leipzig, Jeremy, McManus, Meagan J., Gouspillou, Gilles, Barbat-Artigas, Sébastien, Dos Santos, Carlos, Hepple, Russell T., Murdock, Deborah G., Wallace, Douglas C.
Publicado no Proc Natl Acad Sci U S A (2017)

Retroviral DNA Integration: Viral and Cellular Determinants of Target-Site Selection

Por Lewinski, Mary K, Yamashita, Masahiro, Emerman, Michael, Ciuffi, Angela, Marshall, Heather, Crawford, Gregory, Collins, Francis, Shinn, Paul, Leipzig, Jeremy, Hannenhalli, Sridhar, Berry, Charles C, Ecker, Joseph R, Bushman, Frederic D
Publicado em 2006

DNA bar coding and pyrosequencing to analyze adverse events in therapeutic gene transfer

Por Wang, Gary P., Garrigue, Alexandrine, Ciuffi, Angela, Ronen, Keshet, Leipzig, Jeremy, Berry, Charles, Lagresle-Peyrou, Chantal, Benjelloun, Fatine, Hacein-Bey-Abina, Salima, Fischer, Alain, Cavazzana-Calvo, Marina, Bushman, Frederic D.
Publicado em 2008

MSeqDR: A Centralized Knowledge Repository and Bioinformatics Web Resource to Facilitate Genomic Investigations in Mitochondrial Disease

Por Shen, Lishuang, Diroma, Maria Angela, Gonzalez, Michael, Navarro-Gomez, Daniel, Leipzig, Jeremy, Lott, Marie T., van Oven, Mannis, Wallace, Douglas C., Muraresku, Colleen Clarke, Zolkipli-Cunningham, Zarazuela, Chinnery, Patrick F., Attimonelli, Marcella, Zuchner, Stephan, Falk, Marni J., Gai, Xiaowu
Publicado no Hum Mutat (2016)

Mitochondrial Disease Sequence Data Resource (MSeqDR): A global grass-roots consortium to facilitate deposition, curation, annotation, and integrated analysis of genomic data for t...

Por Falk, Marni J., Shen, Lishuang, Gonzalez, Michael, Leipzig, Jeremy, Lott, Marie T., Stassen, Alphons P.M., Diroma, Maria Angela, Navarro-Gomez, Daniel, Yeske, Philip, Bai, Renkui, Boles, Richard G., Brilhante, Virginia, Ralph, David, DaRe, Jeana T., Shelton, Robert, Terry, Sharon, Zhang, Zhe, Copeland, William C., van Oven, Mannis, Prokisch, Holger, Wallace, Douglas C., Attimonelli, Marcella, Krotoski, Danuta, Zuchner, Stephan, Gai, Xiaowu
Publicado no Mol Genet Metab (2014)

Increased Frequency of De Novo Copy Number Variations in Congenital Heart Disease by Integrative Analysis of SNP Array and Exome Sequence Data

Por Glessner, Joseph T., Bick, Alexander G., Ito, Kaoru, Homsy, Jason, Rodriguez-Murillo, Laura, Fromer, Menachem, Mazaika, Erica, Vardarajan, Badri, Italia, Michael, Leipzig, Jeremy, DePalma, Steven R., Golhar, Ryan, Sanders, Stephan J., Yamrom, Boris, Ronemus, Michael, Iossifov, Ivan, Willsey, A. Jeremy, State, Matthew W., Kaltman, Jonathan R., White, Peter S., Shen, Yufeng, Warburton, Dorothy, Brueckner, Martina, Seidman, Christine, Goldmuntz, Elizabeth, Gelb, Bruce D., Lifton, Richard, Seidman, Jonathan, Hakonarson, Hakon, Chung, Wendy K.
Publicado em 2014

De novo mutations in histone modifying genes in congenital heart disease

Por Zaidi, Samir, Choi, Murim, Wakimoto, Hiroko, Ma, Lijiang, Jiang, Jianming, Overton, John D., Romano-Adesman, Angela, Bjornson, Robert D., Breitbart, Roger E., Brown, Kerry K., Carriero, Nicholas J., Cheung, Yee Him, Deanfield, John, DePalma, Steve, Fakhro, Khalid A., Glessner, Joseph, Hakonarson, Hakon, Italia, Michael, Kaltman, Jonathan R., Kaski, Juan, Kim, Richard, Kline, Jennie K., Lee, Teresa, Leipzig, Jeremy, Lopez, Alexander, Mane, Shrikant M., Mitchell, Laura E., Newburger, Jane W., Parfenov, Michael, Pe'er, Itsik, Porter, George, Roberts, Amy, Sachidanandam, Ravi, Sanders, Stephan J., Seiden, Howard S., State, Mathew W., Subramanian, Sailakshmi, Tikhonova, Irina R., Wang, Wei, Warburton, Dorothy, White, Peter S., Williams, Ismee A., Zhao, Hongyu, Seidman, Jonathan G., Brueckner, Martina, Chung, Wendy K., Gelb, Bruce D., Goldmuntz, Elizabeth, Seidman, Christine E., Lifton, Richard P.
Publicado em 2013