From case studies to community knowledge base: MSeqDR provides a platform for the curation and genomic analysis of mitochondrial diseases

per Falk, Marni J., Shen, Lishuang, Gai, Xiaowu
Publicat a Cold Spring Harb Mol Case Stud (2016)

The Chromatin Remodeling Component Arid1a Is a Suppressor of Spontaneous Mammary Tumors in Mice

per Kartha, Nithya, Shen, Lishuang, Maskin, Carolyn, Wallace, Marsha, Schimenti, John C.
Publicat a Genetics (2016)

Comprehensive Genome Analysis of 6,000 USA SARS-CoV-2 Isolates Reveals Haplotype Signatures and Localized Transmission Patterns by State and by Country

per Shen, Lishuang, Dien Bard, Jennifer, Biegel, Jaclyn A., Judkins, Alexander R., Gai, Xiaowu
Publicat a Front Microbiol (2020)

Clinical Bioinformatics in Precise Diagnosis of Mitochondrial Disease

per Shen, Lishuang, McCormick, Elizabeth M., Muraresk, Colleen C, Falk, Marni J., Gai, Xiaowu
Publicat a Clin Lab Med (2020)

Bone marrow transcriptome and epigenome profiles of equine common variable immunodeficiency patients unveil block of B lymphocyte differentiation

per Tallmadge, Rebecca L., Shen, Lishuang, Tseng, Chia T., Miller, Steven C., Barry, Jay, Felippe, M. Julia B.
Publicat a Clin Immunol (2015)

MSeqDR mvTool: a Mitochondrial DNA Web and API Resource for Comprehensive Variant Annotation, Universal Nomenclature Collation, and Reference Genome Conversion

per Shen, Lishuang, Attimonelli, Marcella, Bai, Renkui, Lott, Marie T., Wallace, Douglas C., Falk, Marni J., Gai, Xiaowu
Publicat a Hum Mutat (2018)

Emerging variants of concern in SARS-CoV-2 membrane protein: a highly conserved target with potential pathological and therapeutic implications

per Shen, Lishuang, Bard, Jennifer Dien, Triche, Timothy J., Judkins, Alexander R., Biegel, Jaclyn A., Gai, Xiaowu
Publicat a Emerg Microbes Infect (2021)

Rapidly emerging SARS-CoV-2 B.1.1.7 sub-lineage in the United States of America with spike protein D178H and membrane protein V70L mutations

per Shen, Lishuang, Bard, Jennifer Dien, Triche, Timothy J., Judkins, Alexander R., Biegel, Jaclyn A., Gai, Xiaowu
Publicat a Emerg Microbes Infect (2021)

BarleyBase—an expression profiling database for plant genomics

per Shen, Lishuang, Gong, Jian, Caldo, Rico A., Nettleton, Dan, Cook, Dianne, Wise, Roger P., Dickerson, Julie A.
Publicat 2005

HmtDB 2016: data update, a better performing query system and human mitochondrial DNA haplogroup predictor

per Clima, Rosanna, Preste, Roberto, Calabrese, Claudia, Diroma, Maria Angela, Santorsola, Mariangela, Scioscia, Gaetano, Simone, Domenico, Shen, Lishuang, Gasparre, Giuseppe, Attimonelli, Marcella
Publicat a Nucleic Acids Res (2017)

Whole Genome Sequencing Investigation of a Tuberculosis Outbreak in Port-au-Prince, Haiti Caused by a Strain with a “Low-Level” rpoB Mutation L511P – Insights into a Mechanism of R...

per Ocheretina, Oksana, Shen, Lishuang, Escuyer, Vincent E., Mabou, Marie-Marcelle, Royal-Mardi, Gertrude, Collins, Sean E., Pape, Jean W., Fitzgerald, Daniel W.
Publicat a PLoS One (2015)

A semiautomated whole-exome sequencing workflow leads to increased diagnostic yield and identification of novel candidate variants

per Ji, Jianling, Shen, Lishuang, Bootwalla, Moiz, Quindipan, Catherine, Tatarinova, Tatiana, Maglinte, Dennis T., Buckley, Jonathan, Raca, Gordana, Saitta, Sulagna C., Biegel, Jaclyn A., Gai, Xiaowu
Publicat a Cold Spring Harb Mol Case Stud (2019)

Inherited germline ATRX mutation in two brothers with ATR-X syndrome and osteosarcoma

per Ji, Jianling, Quindipan, Catherine, Parham, David, Shen, Lishuang, Ruble, David, Bootwalla, Moiz, Maglinte, Dennis T., Gai, Xiaowu, Saitta, Sulagna C., Biegel, Jaclyn A., Mascarenhas, Leo
Publicat a Am J Med Genet A (2017)

A-MYB (MYBL1) transcription factor is a master regulator of male meiosis

per Bolcun-Filas, Ewelina, Bannister, Laura A., Barash, Alex, Schimenti, Kerry J., Hartford, Suzanne A., Eppig, John J., Handel, Mary Ann, Shen, Lishuang, Schimenti, John C.
Publicat 2011

Phy-Mer: a novel alignment-free and reference-independent mitochondrial haplogroup classifier

per Navarro-Gomez, Daniel, Leipzig, Jeremy, Shen, Lishuang, Lott, Marie, Stassen, Alphons P.M., Wallace, Douglas C., Wiggs, Janey L., Falk, Marni J., van Oven, Mannis, Gai, Xiaowu
Publicat a Bioinformatics (2015)

NOD2 genetic variants and sarcoidosis-associated uveitis()

per Davoudi, Samaneh, Navarro-Gomez, Daniel, Shen, Lishuang, Ung, Cindy, Ren, Aiai, Sullivan, Lynn, Kwong, Mindy, Janessian, Maria, Comander, Jason, Gai, Xiaowu, Lobo, Ann-Marie, Papaliodis, George N., Sobrin, Lucia
Publicat a Am J Ophthalmol Case Rep (2016)

Simultaneous identification of clinically relevant RB1 mutations and copy number alterations in aqueous humor of retinoblastoma eyes

per Xu, Liya, Shen, Lishuang, Polski, Ashley, Prabakar, Rishvanth K., Shah, Rachana, Jubran, Rima, Kim, Jonathan W., Biegel, Jacklyn, Kuhn, Peter, Cobrinik, David, Hicks, James, Gai, Xiaowu, Berry, Jesse L.
Publicat a Ophthalmic Genet (2020)

Comparative Oncogenomics Implicates the Neurofibromin 1 Gene (NF1) as a Breast Cancer Driver

per Wallace, Marsha D., Pfefferle, Adam D., Shen, Lishuang, McNairn, Adrian J., Cerami, Ethan G., Fallon, Barbara L., Rinaldi, Vera D., Southard, Teresa L., Perou, Charles M., Schimenti, John C.
Publicat 2012

High Prevalence of SARS-CoV-2 Genetic Variation and D614G Mutation in Pediatric Patients With COVID-19

per Pandey, Utsav, Yee, Rebecca, Shen, Lishuang, Judkins, Alexander R, Bootwalla, Moiz, Ryutov, Alex, Maglinte, Dennis T, Ostrow, Dejerianne, Precit, Mimi, Biegel, Jaclyn A, Bender, Jeffrey M, Gai, Xiaowu, Dien Bard, Jennifer
Publicat a Open Forum Infect Dis (2020)

Early pandemic molecular diversity of SARS-CoV-2 in children

per Moustafa, Ahmed M., Otto, William, Gai, Xiaowu, Pandey, Utsav, Ryutov, Alex, Bootwalla, Moiz, Maglinte, Dennis T, Shen, Lishuang, Ruble, David, Ostrow, Dejerianne, Gerber, Jeffrey S., Bard, Jennifer Dien, Harris, Rebecca M., Planet, Paul J.
Publicat a medRxiv (2021)