Optimization and evaluation of a proportional derivative controller for planar arm movement

av Jagodnik, Kathleen M., van den Bogert, Antonie J.
Publicerad 2010

An Optimized Proportional-Derivative Controller for the Human Upper Extremity with Gravity

av Jagodnik, Kathleen M., Blana, Dimitra, van den Bogert, Antonie J., Kirsch, Robert F.
I publikationen J Biomech (2015)

Drug Gene Budger (DGB): an application for ranking drugs to modulate a specific gene based on transcriptomic signatures

av Wang, Zichen, He, Edward, Sani, Kevin, Jagodnik, Kathleen M, Silverstein, Moshe C, Ma’ayan, Avi
I publikationen Bioinformatics (2019)

Training an Actor-Critic Reinforcement Learning Controller for Arm Movement Using Human-Generated Rewards

av Jagodnik, Kathleen M., Thomas, Philip S., van den Bogert, Antonie J., Branicky, Michael S., Kirsch, Robert F.
I publikationen IEEE Trans Neural Syst Rehabil Eng (2017)

EnrichrBot: Twitter bot tracking tweets about human genes

av Bartal, Alon, Lachmann, Alexander, Clarke, Daniel J B, Seiden, Allison H, Jagodnik, Kathleen M, Ma’ayan, Avi
I publikationen Bioinformatics (2020)

Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses

av Torre, Denis, Krawczuk, Patrycja, Jagodnik, Kathleen M., Lachmann, Alexander, Wang, Zichen, Wang, Lily, Kuleshov, Maxim V., Ma’ayan, Avi
I publikationen Sci Data (2018)

Massive mining of publicly available RNA-seq data from human and mouse

av Lachmann, Alexander, Torre, Denis, Keenan, Alexandra B., Jagodnik, Kathleen M., Lee, Hoyjin J., Wang, Lily, Silverstein, Moshe C., Ma’ayan, Avi
I publikationen Nat Commun (2018)

ChEA3: transcription factor enrichment analysis by orthogonal omics integration

av Keenan, Alexandra B, Torre, Denis, Lachmann, Alexander, Leong, Ariel K, Wojciechowicz, Megan L, Utti, Vivian, Jagodnik, Kathleen M, Kropiwnicki, Eryk, Wang, Zichen, Ma’ayan, Avi
I publikationen Nucleic Acids Res (2019)

Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning

av Kropiwnicki, Eryk, Evangelista, John E, Stein, Daniel J, Clarke, Daniel J B, Lachmann, Alexander, Kuleshov, Maxim V, Jeon, Minji, Jagodnik, Kathleen M, Ma’ayan, Avi
I publikationen Database (Oxford) (2021)

The COVID-19 Gene and Drug Set Library

av Kuleshov, Maxim V., Clarke, Daniel J.B., Kropiwnicki, Eryk, Jagodnik, Kathleen M., Bartal, Alon, Evangelista, John E., Zhou, Abigail, Ferguson, Laura B., Lachmann, Alexander, Ma’ayan, Avi
I publikationen Res Sq (2020)

GEN3VA: aggregation and analysis of gene expression signatures from related studies

av Gundersen, Gregory W., Jagodnik, Kathleen M., Woodland, Holly, Fernandez, Nicholas F., Sani, Kevin, Dohlman, Anders B., Ung, Peter Man-Un, Monteiro, Caroline D., Schlessinger, Avner, Ma’ayan, Avi
I publikationen BMC Bioinformatics (2016)

Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center

av Stathias, Vasileios, Koleti, Amar, Vidović, Dušica, Cooper, Daniel J., Jagodnik, Kathleen M., Terryn, Raymond, Forlin, Michele, Chung, Caty, Torre, Denis, Ayad, Nagi, Medvedovic, Mario, Ma'ayan, Avi, Pillai, Ajay, Schürer, Stephan C.
I publikationen Sci Data (2018)

Gene Set Knowledge Discovery with Enrichr

av Xie, Zhuorui, Bailey, Allison, Kuleshov, Maxim V., Clarke, Daniel J.B., Evangelista, John E., Jenkins, Sherry L., Lachmann, Alexander, Wojciechowicz, Megan L., Kropiwnicki, Eryk, Jagodnik, Kathleen M., Jeon, Minji, Ma’ayan, Avi
I publikationen Curr Protoc (2021)

Developing a Framework for Digital Objects in the Big Data to Knowledge (BD2K) Commons: Report from the Commons Framework Pilots Workshop

av Jagodnik, Kathleen M., Koplev, Simon, Jenkins, Sherry, Ohno-Machado, Lucila, Paten, Benedict, Schurer, Stephan C., Dumontier, Michel, Verborgh, Ruben, Bui, Alex, Ping, Peipei, McKenna, Neil J., Madduri, Ravi, Pillai, Ajay, Ma’ayan, Avi
I publikationen J Biomed Inform (2017)

The COVID-19 Drug and Gene Set Library

av Kuleshov, Maxim V., Stein, Daniel J., Clarke, Daniel J.B., Kropiwnicki, Eryk, Jagodnik, Kathleen M., Bartal, Alon, Evangelista, John E., Hom, Jason, Cheng, Minxuan, Bailey, Allison, Zhou, Abigail, Ferguson, Laura B., Lachmann, Alexander, Ma'ayan, Avi
I publikationen Patterns (N Y) (2020)

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

av Kuleshov, Maxim V., Jones, Matthew R., Rouillard, Andrew D., Fernandez, Nicolas F., Duan, Qiaonan, Wang, Zichen, Koplev, Simon, Jenkins, Sherry L., Jagodnik, Kathleen M., Lachmann, Alexander, McDermott, Michael G., Monteiro, Caroline D., Gundersen, Gregory W., Ma'ayan, Avi
I publikationen Nucleic Acids Res (2016)

Appyters: Turning Jupyter Notebooks into data-driven web apps

av Clarke, Daniel J.B., Jeon, Minji, Stein, Daniel J., Moiseyev, Nicole, Kropiwnicki, Eryk, Dai, Charles, Xie, Zhuorui, Wojciechowicz, Megan L., Litz, Skylar, Hom, Jason, Evangelista, John Erol, Goldman, Lucas, Zhang, Serena, Yoon, Christine, Ahamed, Tahmid, Bhuiyan, Samantha, Cheng, Minxuan, Karam, Julie, Jagodnik, Kathleen M., Shu, Ingrid, Lachmann, Alexander, Ayling, Sam, Jenkins, Sherry L., Ma'ayan, Avi
I publikationen Patterns (N Y) (2021)

Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data

av Koleti, Amar, Terryn, Raymond, Stathias, Vasileios, Chung, Caty, Cooper, Daniel J, Turner, John P, Vidović, Dušica, Forlin, Michele, Kelley, Tanya T, D’Urso, Alessandro, Allen, Bryce K, Torre, Denis, Jagodnik, Kathleen M, Wang, Lily, Jenkins, Sherry L, Mader, Christopher, Niu, Wen, Fazel, Mehdi, Mahi, Naim, Pilarczyk, Marcin, Clark, Nicholas, Shamsaei, Behrouz, Meller, Jarek, Vasiliauskas, Juozas, Reichard, John, Medvedovic, Mario, Ma’ayan, Avi, Pillai, Ajay, Schürer, Stephan C
I publikationen Nucleic Acids Res (2018)

FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources

av Clarke, Daniel J.B., Wang, Lily, Jones, Alex, Wojciechowicz, Megan L., Torre, Denis, Jagodnik, Kathleen M., Jenkins, Sherry L., McQuilton, Peter, Flamholz, Zachary, Silverstein, Moshe C., Schilder, Brian M., Robasky, Kimberly, Castillo, Claris, Idaszak, Ray, Ahalt, Stanley C., Williams, Jason, Schurer, Stephan, Cooper, Daniel J., de Miranda Azevedo, Ricardo, Klenk, Juergen A., Haendel, Melissa A., Nedzel, Jared, Avillach, Paul, Shimoyama, Mary E., Harris, Rayna M., Gamble, Meredith, Poten, Rudy, Charbonneau, Amanda L., Larkin, Jennie, Brown, C. Titus, Bonazzi, Vivien R., Dumontier, Michel J., Sansone, Susanna-Assunta, Ma’ayan, Avi
I publikationen Cell Syst (2019)

Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd

av Wang, Zichen, Monteiro, Caroline D., Jagodnik, Kathleen M., Fernandez, Nicolas F., Gundersen, Gregory W., Rouillard, Andrew D., Jenkins, Sherry L., Feldmann, Axel S., Hu, Kevin S., McDermott, Michael G., Duan, Qiaonan, Clark, Neil R., Jones, Matthew R., Kou, Yan, Goff, Troy, Woodland, Holly, Amaral, Fabio M R., Szeto, Gregory L., Fuchs, Oliver, Schüssler-Fiorenza Rose, Sophia M., Sharma, Shvetank, Schwartz, Uwe, Bausela, Xabier Bengoetxea, Szymkiewicz, Maciej, Maroulis, Vasileios, Salykin, Anton, Barra, Carolina M., Kruth, Candice D., Bongio, Nicholas J., Mathur, Vaibhav, Todoric, Radmila D, Rubin, Udi E., Malatras, Apostolos, Fulp, Carl T., Galindo, John A., Motiejunaite, Ruta, Jüschke, Christoph, Dishuck, Philip C., Lahl, Katharina, Jafari, Mohieddin, Aibar, Sara, Zaravinos, Apostolos, Steenhuizen, Linda H., Allison, Lindsey R., Gamallo, Pablo, de Andres Segura, Fernando, Dae Devlin, Tyler, Pérez-García, Vicente, Ma'ayan, Avi
I publikationen Nat Commun (2016)