A Comparison of Using Taverna and BPEL in Building Scientific Workflows: the case of caGrid

ανά Tan, Wei, Missier, Paolo, Foster, Ian, Madduri, Ravi, Goble, Carole
Έκδοση 2010

Models and Simulations as a Service: Exploring the Use of Galaxy for Delivering Computational Models

ανά Walker, Mark A., Madduri, Ravi, Rodriguez, Alex, Greenstein, Joseph L., Winslow, Raimond L.
Τόπος έκδοσης Biophys J (2016)

CaGrid Workflow Toolkit: A taverna based workflow tool for cancer grid

ανά Tan, Wei, Madduri, Ravi, Nenadic, Alexandra, Soiland-Reyes, Stian, Sulakhe, Dinanath, Foster, Ian, Goble, Carole A
Έκδοση 2010

A Novel MERTK Mutation Causing Retinitis Pigmentosa

ανά Al-khersan, Hasenin, Shah, Kaanan P., Jung, Segun C., Rodriguez, Alex, Madduri, Ravi K., Grassi, Michael A.
Τόπος έκδοσης Graefes Arch Clin Exp Ophthalmol (2017)

Experiences Building Globus Genomics: A Next-Generation Sequencing Analysis Service using Galaxy, Globus, and Amazon Web Services

ανά Madduri, Ravi K., Sulakhe, Dinanath, Lacinski, Lukasz, Liu, Bo, Rodriguez, Alex, Chard, Kyle, Dave, Utpal J., Foster, Ian T.
Έκδοση 2014

Cloud-based bioinformatics workflow platform for large-scale next-generation sequencing analyses

ανά Liu, Bo, Madduri, Ravi K, Sotomayor, Borja, Chard, Kyle, Lacinski, Lukasz, Dave, Utpal J, Li, Jianqiang, Liu, Chunchen, Foster, Ian T
Έκδοση 2014

A case study for cloud based high throughput analysis of NGS data using the globus genomics system

ανά Bhuvaneshwar, Krithika, Sulakhe, Dinanath, Gauba, Robinder, Rodriguez, Alex, Madduri, Ravi, Dave, Utpal, Lacinski, Lukasz, Foster, Ian, Gusev, Yuriy, Madhavan, Subha
Τόπος έκδοσης Comput Struct Biotechnol J (2014)

caGrid 1.0: A Grid Enterprise Architecture for Cancer Research

ανά Oster, Scott, Langella, Stephen, Hastings, Shannon, Ervin, David, Madduri, Ravi, Kurc, Tahsin, Siebenlist, Frank, Covitz, Peter, Shanbhag, Krishnakant, Foster, Ian, Saltz, Joel
Έκδοση 2007

Genetic deletion of Sphk2 confers protection against Pseudomonas aeruginosa mediated differential expression of genes related to virulent infection and inflammation in mouse lung

ανά Ebenezer, David L., Fu, Panfeng, Krishnan, Yashaswin, Maienschein-Cline, Mark, Hu, Hong, Jung, Segun, Madduri, Ravi, Arbieva, Zarema, Harijith, Anantha, Natarajan, Viswanathan
Τόπος έκδοσης BMC Genomics (2019)

caGrid 1.0: An Enterprise Grid Infrastructure for Biomedical Research

ανά Oster, Scott, Langella, Stephen, Hastings, Shannon, Ervin, David, Madduri, Ravi, Phillips, Joshua, Kurc, Tahsin, Siebenlist, Frank, Covitz, Peter, Shanbhag, Krishnakant, Foster, Ian, Saltz, Joel
Έκδοση 2008

Consensus Genotyper for Exome Sequencing (CGES): improving the quality of exome variant genotypes

ανά Trubetskoy, Vassily, Rodriguez, Alex, Dave, Uptal, Campbell, Nicholas, Crawford, Emily L., Cook, Edwin H., Sutcliffe, James S., Foster, Ian, Madduri, Ravi, Cox, Nancy J., Davis, Lea K.
Τόπος έκδοσης Bioinformatics (2015)

Prevalence of Inherited Mutations in Breast Cancer Predisposition Genes among Uganda and Cameroon Women

ανά Adedokun, Babatunde, Zheng, Yonglan, Ndom, Paul, Gakwaya, Antony, Makumbi, Timothy, Zhou, Alicia Y., Yoshimatsu, Toshio F., Rodriguez, Alex, Madduri, Ravi K., Foster, Ian T., Sallam, Aminah, Olopade, Olufunmilayo I., Huo, Dezheng
Τόπος έκδοσης Cancer Epidemiol Biomarkers Prev (2019)

Reproducible big data science: A case study in continuous FAIRness

ανά Madduri, Ravi, Chard, Kyle, D’Arcy, Mike, Jung, Segun C., Rodriguez, Alexis, Sulakhe, Dinanath, Deutsch, Eric, Funk, Cory, Heavner, Ben, Richards, Matthew, Shannon, Paul, Glusman, Gustavo, Price, Nathan, Kesselman, Carl, Foster, Ian
Τόπος έκδοσης PLoS One (2019)

Big biomedical data as the key resource for discovery science

ανά Toga, Arthur W, Foster, Ian, Kesselman, Carl, Madduri, Ravi, Chard, Kyle, Deutsch, Eric W, Price, Nathan D, Glusman, Gustavo, Heavner, Benjamin D, Dinov, Ivo D, Ames, Joseph, Van Horn, John, Kramer, Roger, Hood, Leroy
Τόπος έκδοσης J Am Med Inform Assoc (2015)

Developing a Framework for Digital Objects in the Big Data to Knowledge (BD2K) Commons: Report from the Commons Framework Pilots Workshop

ανά Jagodnik, Kathleen M., Koplev, Simon, Jenkins, Sherry, Ohno-Machado, Lucila, Paten, Benedict, Schurer, Stephan C., Dumontier, Michel, Verborgh, Ruben, Bui, Alex, Ping, Peipei, McKenna, Neil J., Madduri, Ravi, Pillai, Ajay, Ma’ayan, Avi
Τόπος έκδοσης J Biomed Inform (2017)

A Roadmap for caGrid, an Enterprise Grid Architecture for Biomedical Research

ανά Saltz, Joel, Hastings, Shannon, Langella, Stephen, Oster, Scott, Kurc, Tahsin, Payne, Philip, Ferreira, Renato, Plale, Beth, Goble, Carole, Ervin, David, Sharma, Ashish, Pan, Tony, Permar, Justin, Brezany, Peter, Siebenlist, Frank, Madduri, Ravi, Foster, Ian, Shanbhag, Krishnakant, Mead, Charlie, Hong, Neil Chue
Έκδοση 2008

Utilisation of a thoracic oncology database to capture radiological and pathological images for evaluation of response to chemotherapy in patients with malignant pleural mesothelio...

ανά Carey, George B, Kazantsev, Stephanie, Surati, Mosmi, Rolle, Cleo E, Kanteti, Archana, Sadiq, Ahad, Bahroos, Neil, Raumann, Brigitte, Madduri, Ravi, Dave, Paul, Starkey, Adam, Hensing, Thomas, Husain, Aliya N, Vokes, Everett E, Vigneswaran, Wickii, Armato, Samuel G, Kindler, Hedy L, Salgia, Ravi
Έκδοση 2012

Enabling collaborative research using the Biomedical Informatics Research Network (BIRN)

ανά Helmer, Karl G, Ambite, Jose Luis, Ames, Joseph, Ananthakrishnan, Rachana, Burns, Gully, Chervenak, Ann L, Foster, Ian, Liming, Lee, Keator, David, Macciardi, Fabio, Madduri, Ravi, Navarro, John-Paul, Potkin, Steven, Rosen, Bruce, Ruffins, Seth, Schuler, Robert, Turner, Jessica A, Toga, Arthur, Williams, Christina, Kesselman, Carl
Έκδοση 2011

e-Science, caGrid, and Translational Biomedical Research

ανά Saltz, Joel, Kurc, Tahsin, Hastings, Shannon, Langella, Stephen, Oster, Scott, Ervin, David, Sharma, Ashish, Pan, Tony, Gurcan, Metin, Permar, Justin, Ferreira, Renato, Payne, Philip, Catalyurek, Umit, Caserta, Enrico, Leone, Gustavo, Ostrowski, Michael C., Madduri, Ravi, Foster, Ian, Madhavan, Subhashree, Buetow, Kenneth H., Shanbhag, Krishnakant, Siegel, Eliot
Έκδοση 2008

Predictive Big Data Analytics: A Study of Parkinson’s Disease Using Large, Complex, Heterogeneous, Incongruent, Multi-Source and Incomplete Observations

ανά Dinov, Ivo D., Heavner, Ben, Tang, Ming, Glusman, Gustavo, Chard, Kyle, Darcy, Mike, Madduri, Ravi, Pa, Judy, Spino, Cathie, Kesselman, Carl, Foster, Ian, Deutsch, Eric W., Price, Nathan D., Van Horn, John D., Ames, Joseph, Clark, Kristi, Hood, Leroy, Hampstead, Benjamin M., Dauer, William, Toga, Arthur W.
Τόπος έκδοσης PLoS One (2016)