Optimization and evaluation of a proportional derivative controller for planar arm movement

Tekijä Jagodnik, Kathleen M., van den Bogert, Antonie J.
Julkaistu 2010

An Optimized Proportional-Derivative Controller for the Human Upper Extremity with Gravity

Tekijä Jagodnik, Kathleen M., Blana, Dimitra, van den Bogert, Antonie J., Kirsch, Robert F.
Julkaisussa J Biomech (2015)

Drug Gene Budger (DGB): an application for ranking drugs to modulate a specific gene based on transcriptomic signatures

Tekijä Wang, Zichen, He, Edward, Sani, Kevin, Jagodnik, Kathleen M, Silverstein, Moshe C, Ma’ayan, Avi
Julkaisussa Bioinformatics (2019)

Training an Actor-Critic Reinforcement Learning Controller for Arm Movement Using Human-Generated Rewards

Tekijä Jagodnik, Kathleen M., Thomas, Philip S., van den Bogert, Antonie J., Branicky, Michael S., Kirsch, Robert F.
Julkaisussa IEEE Trans Neural Syst Rehabil Eng (2017)

EnrichrBot: Twitter bot tracking tweets about human genes

Tekijä Bartal, Alon, Lachmann, Alexander, Clarke, Daniel J B, Seiden, Allison H, Jagodnik, Kathleen M, Ma’ayan, Avi
Julkaisussa Bioinformatics (2020)

Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses

Tekijä Torre, Denis, Krawczuk, Patrycja, Jagodnik, Kathleen M., Lachmann, Alexander, Wang, Zichen, Wang, Lily, Kuleshov, Maxim V., Ma’ayan, Avi
Julkaisussa Sci Data (2018)

Massive mining of publicly available RNA-seq data from human and mouse

Tekijä Lachmann, Alexander, Torre, Denis, Keenan, Alexandra B., Jagodnik, Kathleen M., Lee, Hoyjin J., Wang, Lily, Silverstein, Moshe C., Ma’ayan, Avi
Julkaisussa Nat Commun (2018)

ChEA3: transcription factor enrichment analysis by orthogonal omics integration

Tekijä Keenan, Alexandra B, Torre, Denis, Lachmann, Alexander, Leong, Ariel K, Wojciechowicz, Megan L, Utti, Vivian, Jagodnik, Kathleen M, Kropiwnicki, Eryk, Wang, Zichen, Ma’ayan, Avi
Julkaisussa Nucleic Acids Res (2019)

Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning

Tekijä Kropiwnicki, Eryk, Evangelista, John E, Stein, Daniel J, Clarke, Daniel J B, Lachmann, Alexander, Kuleshov, Maxim V, Jeon, Minji, Jagodnik, Kathleen M, Ma’ayan, Avi
Julkaisussa Database (Oxford) (2021)

The COVID-19 Gene and Drug Set Library

Tekijä Kuleshov, Maxim V., Clarke, Daniel J.B., Kropiwnicki, Eryk, Jagodnik, Kathleen M., Bartal, Alon, Evangelista, John E., Zhou, Abigail, Ferguson, Laura B., Lachmann, Alexander, Ma’ayan, Avi
Julkaisussa Res Sq (2020)

GEN3VA: aggregation and analysis of gene expression signatures from related studies

Tekijä Gundersen, Gregory W., Jagodnik, Kathleen M., Woodland, Holly, Fernandez, Nicholas F., Sani, Kevin, Dohlman, Anders B., Ung, Peter Man-Un, Monteiro, Caroline D., Schlessinger, Avner, Ma’ayan, Avi
Julkaisussa BMC Bioinformatics (2016)

Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center

Tekijä Stathias, Vasileios, Koleti, Amar, Vidović, Dušica, Cooper, Daniel J., Jagodnik, Kathleen M., Terryn, Raymond, Forlin, Michele, Chung, Caty, Torre, Denis, Ayad, Nagi, Medvedovic, Mario, Ma'ayan, Avi, Pillai, Ajay, Schürer, Stephan C.
Julkaisussa Sci Data (2018)

Gene Set Knowledge Discovery with Enrichr

Tekijä Xie, Zhuorui, Bailey, Allison, Kuleshov, Maxim V., Clarke, Daniel J.B., Evangelista, John E., Jenkins, Sherry L., Lachmann, Alexander, Wojciechowicz, Megan L., Kropiwnicki, Eryk, Jagodnik, Kathleen M., Jeon, Minji, Ma’ayan, Avi
Julkaisussa Curr Protoc (2021)

Developing a Framework for Digital Objects in the Big Data to Knowledge (BD2K) Commons: Report from the Commons Framework Pilots Workshop

Tekijä Jagodnik, Kathleen M., Koplev, Simon, Jenkins, Sherry, Ohno-Machado, Lucila, Paten, Benedict, Schurer, Stephan C., Dumontier, Michel, Verborgh, Ruben, Bui, Alex, Ping, Peipei, McKenna, Neil J., Madduri, Ravi, Pillai, Ajay, Ma’ayan, Avi
Julkaisussa J Biomed Inform (2017)

The COVID-19 Drug and Gene Set Library

Tekijä Kuleshov, Maxim V., Stein, Daniel J., Clarke, Daniel J.B., Kropiwnicki, Eryk, Jagodnik, Kathleen M., Bartal, Alon, Evangelista, John E., Hom, Jason, Cheng, Minxuan, Bailey, Allison, Zhou, Abigail, Ferguson, Laura B., Lachmann, Alexander, Ma'ayan, Avi
Julkaisussa Patterns (N Y) (2020)

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

Tekijä Kuleshov, Maxim V., Jones, Matthew R., Rouillard, Andrew D., Fernandez, Nicolas F., Duan, Qiaonan, Wang, Zichen, Koplev, Simon, Jenkins, Sherry L., Jagodnik, Kathleen M., Lachmann, Alexander, McDermott, Michael G., Monteiro, Caroline D., Gundersen, Gregory W., Ma'ayan, Avi
Julkaisussa Nucleic Acids Res (2016)

Appyters: Turning Jupyter Notebooks into data-driven web apps

Tekijä Clarke, Daniel J.B., Jeon, Minji, Stein, Daniel J., Moiseyev, Nicole, Kropiwnicki, Eryk, Dai, Charles, Xie, Zhuorui, Wojciechowicz, Megan L., Litz, Skylar, Hom, Jason, Evangelista, John Erol, Goldman, Lucas, Zhang, Serena, Yoon, Christine, Ahamed, Tahmid, Bhuiyan, Samantha, Cheng, Minxuan, Karam, Julie, Jagodnik, Kathleen M., Shu, Ingrid, Lachmann, Alexander, Ayling, Sam, Jenkins, Sherry L., Ma'ayan, Avi
Julkaisussa Patterns (N Y) (2021)

Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data

Tekijä Koleti, Amar, Terryn, Raymond, Stathias, Vasileios, Chung, Caty, Cooper, Daniel J, Turner, John P, Vidović, Dušica, Forlin, Michele, Kelley, Tanya T, D’Urso, Alessandro, Allen, Bryce K, Torre, Denis, Jagodnik, Kathleen M, Wang, Lily, Jenkins, Sherry L, Mader, Christopher, Niu, Wen, Fazel, Mehdi, Mahi, Naim, Pilarczyk, Marcin, Clark, Nicholas, Shamsaei, Behrouz, Meller, Jarek, Vasiliauskas, Juozas, Reichard, John, Medvedovic, Mario, Ma’ayan, Avi, Pillai, Ajay, Schürer, Stephan C
Julkaisussa Nucleic Acids Res (2018)

FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources

Tekijä Clarke, Daniel J.B., Wang, Lily, Jones, Alex, Wojciechowicz, Megan L., Torre, Denis, Jagodnik, Kathleen M., Jenkins, Sherry L., McQuilton, Peter, Flamholz, Zachary, Silverstein, Moshe C., Schilder, Brian M., Robasky, Kimberly, Castillo, Claris, Idaszak, Ray, Ahalt, Stanley C., Williams, Jason, Schurer, Stephan, Cooper, Daniel J., de Miranda Azevedo, Ricardo, Klenk, Juergen A., Haendel, Melissa A., Nedzel, Jared, Avillach, Paul, Shimoyama, Mary E., Harris, Rayna M., Gamble, Meredith, Poten, Rudy, Charbonneau, Amanda L., Larkin, Jennie, Brown, C. Titus, Bonazzi, Vivien R., Dumontier, Michel J., Sansone, Susanna-Assunta, Ma’ayan, Avi
Julkaisussa Cell Syst (2019)

Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd

Tekijä Wang, Zichen, Monteiro, Caroline D., Jagodnik, Kathleen M., Fernandez, Nicolas F., Gundersen, Gregory W., Rouillard, Andrew D., Jenkins, Sherry L., Feldmann, Axel S., Hu, Kevin S., McDermott, Michael G., Duan, Qiaonan, Clark, Neil R., Jones, Matthew R., Kou, Yan, Goff, Troy, Woodland, Holly, Amaral, Fabio M R., Szeto, Gregory L., Fuchs, Oliver, Schüssler-Fiorenza Rose, Sophia M., Sharma, Shvetank, Schwartz, Uwe, Bausela, Xabier Bengoetxea, Szymkiewicz, Maciej, Maroulis, Vasileios, Salykin, Anton, Barra, Carolina M., Kruth, Candice D., Bongio, Nicholas J., Mathur, Vaibhav, Todoric, Radmila D, Rubin, Udi E., Malatras, Apostolos, Fulp, Carl T., Galindo, John A., Motiejunaite, Ruta, Jüschke, Christoph, Dishuck, Philip C., Lahl, Katharina, Jafari, Mohieddin, Aibar, Sara, Zaravinos, Apostolos, Steenhuizen, Linda H., Allison, Lindsey R., Gamallo, Pablo, de Andres Segura, Fernando, Dae Devlin, Tyler, Pérez-García, Vicente, Ma'ayan, Avi
Julkaisussa Nat Commun (2016)