Assembling genomes using short-read sequencing technology

Bằng Jackman, Shaun D, Birol, İnanç
Được phát hành 2010

UniqTag: Content-Derived Unique and Stable Identifiers for Gene Annotation

Bằng Jackman, Shaun D., Bohlmann, Joerg, Birol, İnanç
Xuất bản năm PLoS One (2015)

Sealer: a scalable gap-closing application for finishing draft genomes

Bằng Paulino, Daniel, Warren, René L., Vandervalk, Benjamin P., Raymond, Anthony, Jackman, Shaun D., Birol, Inanç
Xuất bản năm BMC Bioinformatics (2015)

ABySS: A parallel assembler for short read sequence data

Bằng Simpson, Jared T., Wong, Kim, Jackman, Shaun D., Schein, Jacqueline E., Jones, Steven J.M., Birol, İnanç
Được phát hành 2009

DIDA: Distributed Indexing Dispatched Alignment

Bằng Mohamadi, Hamid, Vandervalk, Benjamin P, Raymond, Anthony, Jackman, Shaun D, Chu, Justin, Breshears, Clay P, Birol, Inanc
Xuất bản năm PLoS One (2015)

ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers

Bằng Coombe, Lauren, Zhang, Jessica, Vandervalk, Benjamin P., Chu, Justin, Jackman, Shaun D., Birol, Inanc, Warren, René L.
Xuất bản năm BMC Bioinformatics (2018)

ORCA: a comprehensive bioinformatics container environment for education and research

Bằng Jackman, Shaun D, Mozgacheva, Tatyana, Chen, Susie, O’Huiginn, Brendan, Bailey, Lance, Birol, Inanc, Jones, Steven J M
Xuất bản năm Bioinformatics (2019)

Spaced Seed Data Structures for De Novo Assembly

Bằng Birol, Inanç, Chu, Justin, Mohamadi, Hamid, Jackman, Shaun D., Raghavan, Karthika, Vandervalk, Benjamin P., Raymond, Anthony, Warren, René L.
Xuất bản năm Int J Genomics (2015)

Genome Sequence of Mycoplasma capricolum subsp. capripneumoniae Strain M1601

Bằng Chu, Yuefeng, Gao, Pengchen, Zhao, Ping, He, Ying, Liao, Nancy, Jackman, Shaun, Zhao, Yongjun, Birol, Inanc, Duan, Xiaobo, Lu, Zhongxin
Được phát hành 2011

The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and a comparison with the bark beetle-associated pine pathogen Grosmannia clavigera

Bằng Haridas, Sajeet, Wang, Ye, Lim, Lynette, Massoumi Alamouti, Sepideh, Jackman, Shaun, Docking, Rod, Robertson, Gordon, Birol, Inanc, Bohlmann, Jörg, Breuil, Colette
Được phát hành 2013

Whole Genome Duplication and Enrichment of Metal Cation Transporters Revealed by De Novo Genome Sequencing of Extremely Halotolerant Black Yeast Hortaea werneckii

Bằng Lenassi, Metka, Gostinčar, Cene, Jackman, Shaun, Turk, Martina, Sadowski, Ivan, Nislow, Corey, Jones, Steven, Birol, Inanc, Cimerman, Nina Gunde, Plemenitaš, Ana
Được phát hành 2013

Konnector v2.0: pseudo-long reads from paired-end sequencing data

Bằng Vandervalk, Benjamin P, Yang, Chen, Xue, Zhuyi, Raghavan, Karthika, Chu, Justin, Mohamadi, Hamid, Jackman, Shaun D, Chiu, Readman, Warren, René L, Birol, Inanç
Xuất bản năm BMC Med Genomics (2015)

BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters

Bằng Chu, Justin, Sadeghi, Sara, Raymond, Anthony, Jackman, Shaun D., Nip, Ka Ming, Mar, Richard, Mohamadi, Hamid, Butterfield, Yaron S., Robertson, A. Gordon, Birol, Inanç
Xuất bản năm Bioinformatics (2014)

KLEAT: CLEAVAGE SITE ANALYSIS OF TRANSCRIPTOMES()

Bằng Birol, Inanç, Raymond, Anthony, Chiu, Readman, Nip, Ka Ming, Jackman, Shaun D, Kreitzman, Maayan, Docking, T Roderick, Ennis, Catherine A, Robertson, A Gordon, Karsan, Aly
Xuất bản năm Pac Symp Biocomput (2015)

ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter

Bằng Jackman, Shaun D., Vandervalk, Benjamin P., Mohamadi, Hamid, Chu, Justin, Yeo, Sarah, Hammond, S. Austin, Jahesh, Golnaz, Khan, Hamza, Coombe, Lauren, Warren, Rene L., Birol, Inanc
Xuất bản năm Genome Res (2017)

Tigmint: correcting assembly errors using linked reads from large molecules

Bằng Jackman, Shaun D., Coombe, Lauren, Chu, Justin, Warren, Rene L., Vandervalk, Benjamin P., Yeo, Sarah, Xue, Zhuyi, Mohamadi, Hamid, Bohlmann, Joerg, Jones, Steven J.M., Birol, Inanc
Xuất bản năm BMC Bioinformatics (2018)

Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics’ GemCode Sequencing Data

Bằng Coombe, Lauren, Warren, René L., Jackman, Shaun D., Yang, Chen, Vandervalk, Benjamin P., Moore, Richard A., Pleasance, Stephen, Coope, Robin J., Bohlmann, Joerg, Holt, Robert A., Jones, Steven J. M., Birol, Inanc
Xuất bản năm PLoS One (2016)

Complete Mitochondrial Genome of a Gymnosperm, Sitka Spruce (Picea sitchensis), Indicates a Complex Physical Structure

Bằng Jackman, Shaun D, Coombe, Lauren, Warren, René L, Kirk, Heather, Trinh, Eva, MacLeod, Tina, Pleasance, Stephen, Pandoh, Pawan, Zhao, Yongjun, Coope, Robin J, Bousquet, Jean, Bohlmann, Joerg, Jones, Steven J M, Birol, Inanc
Xuất bản năm Genome Biol Evol (2020)

Updated genome assembly and annotation of Paenibacillus larvae, the agent of American foulbrood disease of honey bees

Bằng Chan, Queenie WT, Cornman, R Scott, Birol, Inanc, Liao, Nancy Y, Chan, Simon K, Docking, T Roderick, Jackman, Shaun D, Taylor, Greg A, Jones, Steven JM, de Graaf, Dirk C, Evans, Jay D, Foster, Leonard J
Được phát hành 2011

Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation

Bằng Jackman, Shaun D., Warren, René L., Gibb, Ewan A., Vandervalk, Benjamin P., Mohamadi, Hamid, Chu, Justin, Raymond, Anthony, Pleasance, Stephen, Coope, Robin, Wildung, Mark R., Ritland, Carol E., Bousquet, Jean, Jones, Steven J. M., Bohlmann, Joerg, Birol, Inanç
Xuất bản năm Genome Biol Evol (2015)