BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters

Large datasets can be screened for sequences from a specific organism, quickly and with low memory requirements, by a data structure that supports time- and memory-efficient set membership queries. Bloom filters offer such queries but require that false positives be controlled. We present BioBloom T...

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Veröffentlicht in:Bioinformatics
Hauptverfasser: Chu, Justin, Sadeghi, Sara, Raymond, Anthony, Jackman, Shaun D., Nip, Ka Ming, Mar, Richard, Mohamadi, Hamid, Butterfield, Yaron S., Robertson, A. Gordon, Birol, Inanç
Format: Artigo
Sprache:Inglês
Veröffentlicht: Oxford University Press 2014
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Online Zugang:https://ncbi.nlm.nih.gov/pmc/articles/PMC4816029/
https://ncbi.nlm.nih.gov/pubmed/25143290
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btu558
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