Bacterial Genome-Wide Association Identifies Novel Factors That Contribute to Ethionamide and Prothionamide Susceptibility in Mycobacterium tuberculosis

Por Hicks, Nathan D., Carey, Allison F., Yang, Jian, Zhao, Yanlin, Fortune, Sarah M.
Publicado no mBio (2019)

Rifampicin and rifabutin resistance in 1003 Mycobacterium tuberculosis clinical isolates

Por Farhat, Maha R, Sixsmith, Jaimie, Calderon, Roger, Hicks, Nathan D, Fortune, Sarah M, Murray, Megan
Publicado no J Antimicrob Chemother (2019)

Structural and functional insight into the Mycobacterium tuberculosis protein PrpR reveals a novel type of transcription factor

Por Tang, Su, Hicks, Nathan D, Cheng, Yu-Shan, Silva, Andres, Fortune, Sarah M, Sacchettini, James C
Publicado no Nucleic Acids Res (2019)

Digitally Barcoding Mycobacterium tuberculosis Reveals In Vivo Infection Dynamics in the Macaque Model of Tuberculosis

Por Martin, Constance J., Cadena, Anthony M., Leung, Vivian W., Lin, Philana Ling, Maiello, Pauline, Hicks, Nathan, Chase, Michael R., Flynn, JoAnne L., Fortune, Sarah M.
Publicado no mBio (2017)

First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ

Por Muller, Emilie E. L., Narayanasamy, Shaman, Zeimes, Myriam, Laczny, Cédric C., Lebrun, Laura A., Herold, Malte, Hicks, Nathan D., Gillece, John D., Schupp, James M., Keim, Paul, Wilmes, Paul
Publicado no Stand Genomic Sci (2017)

More than 50% of Clostridium difficile Isolates from Pet Dogs in Flagstaff, USA, Carry Toxigenic Genotypes

Por Stone, Nathan E., Sidak-Loftis, Lindsay C., Sahl, Jason W., Vazquez, Adam J., Wiggins, Kristin B., Gillece, John D., Hicks, Nathan D., Schupp, James M., Busch, Joseph D., Keim, Paul, Wagner, David M.
Publicado no PLoS One (2016)

Clinically prevalent mutations in Mycobacterium tuberculosis alter propionate metabolism and mediate multidrug tolerance

Por Hicks, Nathan D., Yang, Jian, Zhang, Xiaobing, Zhao, Bing, Grad, Yonatan H., Liu, Liguo, Ou, Xichao, Chang, Zhili, Xia, Hui, Zhou, Yang, Wang, Shengfen, Dong, Jie, Sun, Lilian, Zhu, Yafang, Zhao, Yanlin, Jin, Qi, Fortune, Sarah M.
Publicado no Nat Microbiol (2018)

Genomic Epidemiology of the Haitian Cholera Outbreak: a Single Introduction Followed by Rapid, Extensive, and Continued Spread Characterized the Onset of the Epidemic

Por Eppinger, Mark, Pearson, Talima, Koenig, Sara S. K., Pearson, Ofori, Hicks, Nathan, Agrawal, Sonia, Sanjar, Fatemeh, Galens, Kevin, Daugherty, Sean, Crabtree, Jonathan, Hendriksen, Rene S., Price, Lance B., Upadhyay, Bishnu P., Shakya, Geeta, Fraser, Claire M., Ravel, Jacques, Keim, Paul S.
Publicado no mBio (2014)

Detection of Low-Level Mixed-Population Drug Resistance in Mycobacterium tuberculosis Using High Fidelity Amplicon Sequencing

Por Colman, Rebecca E., Schupp, James M., Hicks, Nathan D., Smith, David E., Buchhagen, Jordan L., Valafar, Faramarz, Crudu, Valeriu, Romancenco, Elena, Noroc, Ecaterina, Jackson, Lynn, Catanzaro, Donald G., Rodwell, Timothy C., Catanzaro, Antonino, Keim, Paul, Engelthaler, David M.
Publicado no PLoS One (2015)

NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats

Por Sahl, Jason W., Lemmer, Darrin, Travis, Jason, Schupp, James M., Gillece, John D., Aziz, Maliha, Driebe, Elizabeth M., Drees, Kevin P., Hicks, Nathan D., Williamson, Charles Hall Davis, Hepp, Crystal M., Smith, David Earl, Roe, Chandler, Engelthaler, David M., Wagner, David M., Keim, Paul
Publicado no Microb Genom (2016)

Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks

Por Roume, Hugo, Heintz-Buschart, Anna, Muller, Emilie E L, May, Patrick, Satagopam, Venkata P, Laczny, Cédric C, Narayanasamy, Shaman, Lebrun, Laura A, Hoopmann, Michael R, Schupp, James M, Gillece, John D, Hicks, Nathan D, Engelthaler, David M, Sauter, Thomas, Keim, Paul S, Moritz, Robert L, Wilmes, Paul
Publicado no NPJ Biofilms Microbiomes (2015)

Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage

Por Muller, Emilie E. L., Pinel, Nicolás, Laczny, Cédric C., Hoopmann, Michael R., Narayanasamy, Shaman, Lebrun, Laura A., Roume, Hugo, Lin, Jake, May, Patrick, Hicks, Nathan D., Heintz-Buschart, Anna, Wampach, Linda, Liu, Cindy M., Price, Lance B., Gillece, John D., Guignard, Cédric, Schupp, James M., Vlassis, Nikos, Baliga, Nitin S., Moritz, Robert L., Keim, Paul S., Wilmes, Paul
Publicado no Nat Commun (2014)

Cryptococcus gattii in North American Pacific Northwest: Whole-Population Genome Analysis Provides Insights into Species Evolution and Dispersal

Por Engelthaler, David M., Hicks, Nathan D., Gillece, John D., Roe, Chandler C., Schupp, James M., Driebe, Elizabeth M., Gilgado, Felix, Carriconde, Fabian, Trilles, Luciana, Firacative, Carolina, Ngamskulrungroj, Popchai, Castañeda, Elizabeth, Lazera, Marcia dos Santos, Melhem, Marcia S. C., Pérez-Bercoff, Åsa, Huttley, Gavin, Sorrell, Tania C., Voelz, Kerstin, May, Robin C., Fisher, Matthew C., Thompson, George R., Lockhart, Shawn R., Keim, Paul, Meyer, Wieland
Publicado em 2014