The IGS Standard Operating Procedure for Automated Prokaryotic Annotation

por Galens, Kevin, Orvis, Joshua, Daugherty, Sean, Creasy, Heather H., Angiuoli, Sam, White, Owen, Wortman, Jennifer, Mahurkar, Anup, Giglio, Michelle Gwinn
Publicado em 2011

YZGD from Paenibacillus thiaminolyticus, a pyridoxal phosphatase of the HAD (haloacid dehalogenase) superfamily and a versatile member of the Nudix (nucleoside diphosphate x) hydro...

por Tirrell, Isaac M., Wall, Jennifer L., Daley, Christopher J., Denial, Sarah J., Tennis, Frances G., Galens, Kevin G., O'Handley, Suzanne F.
Publicado em 2006

CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing

por Angiuoli, Samuel V, Matalka, Malcolm, Gussman, Aaron, Galens, Kevin, Vangala, Mahesh, Riley, David R, Arze, Cesar, White, James R, White, Owen, Fricke, W Florian
Publicado em 2011

CloVR-Comparative: automated, cloud-enabled comparative microbial genome sequence analysis pipeline

por Agrawal, Sonia, Arze, Cesar, Adkins, Ricky S., Crabtree, Jonathan, Riley, David, Vangala, Mahesh, Galens, Kevin, Fraser, Claire M., Tettelin, Hervé, White, Owen, Angiuoli, Samuel V., Mahurkar, Anup, Fricke, W. Florian
Publicado no BMC Genomics (2017)

Ergatis: a web interface and scalable software system for bioinformatics workflows

por Orvis, Joshua, Crabtree, Jonathan, Galens, Kevin, Gussman, Aaron, Inman, Jason M., Lee, Eduardo, Nampally, Sreenath, Riley, David, Sundaram, Jaideep P., Felix, Victor, Whitty, Brett, Mahurkar, Anup, Wortman, Jennifer, White, Owen, Angiuoli, Samuel V.
Publicado em 2010

Mobile element insertion detection in 89,874 clinical exomes

por Torene, Rebecca I., Galens, Kevin, Liu, Shuxi, Arvai, Kevin, Borroto, Carlos, Scuffins, Julie, Zhang, Zhancheng, Friedman, Bethany, Sroka, Hana, Heeley, Jennifer, Beaver, Erin, Clarke, Lorne, Neil, Sarah, Walia, Jagdeep, Hull, Danna, Juusola, Jane, Retterer, Kyle
Publicado no Genet Med (2020)

Whole-Genome Draft Sequences of 26 Enterohemorrhagic Escherichia coli O157:H7 Strains

por Eppinger, Mark, Daugherty, Sean, Agrawal, Sonia, Galens, Kevin, Sengamalay, Naomi, Sadzewicz, Lisa, Tallon, Luke, Cebula, Thomas A., Mammel, Mark K., Feng, Peter, Soderlund, Robert, Tarr, Phillip I., DebRoy, Chitrita, Dudley, Edward G., Fraser, Claire M., Ravel, Jacques
Publicado em 2013

Genomic Epidemiology of the Haitian Cholera Outbreak: a Single Introduction Followed by Rapid, Extensive, and Continued Spread Characterized the Onset of the Epidemic

por Eppinger, Mark, Pearson, Talima, Koenig, Sara S. K., Pearson, Ofori, Hicks, Nathan, Agrawal, Sonia, Sanjar, Fatemeh, Galens, Kevin, Daugherty, Sean, Crabtree, Jonathan, Hendriksen, Rene S., Price, Lance B., Upadhyay, Bishnu P., Shakya, Geeta, Fraser, Claire M., Ravel, Jacques, Keim, Paul S.
Publicado no mBio (2014)

Personalized genomic analyses for cancer mutation discovery and interpretation

por Jones, Siân, Anagnostou, Valsamo, Lytle, Karli, Parpart-Li, Sonya, Nesselbush, Monica, Riley, David R., Shukla, Manish, Chesnick, Bryan, Kadan, Maura, Papp, Eniko, Galens, Kevin G., Murphy, Derek, Zhang, Theresa, Kann, Lisa, Sausen, Mark, Angiuoli, Samuel V., Diaz, Luis A., Velculescu, Victor E.
Publicado no Sci Transl Med (2015)

Pathema: a clade-specific bioinformatics resource center for pathogen research

por Brinkac, Lauren M., Davidsen, Tanja, Beck, Erin, Ganapathy, Anuradha, Caler, Elisabet, Dodson, Robert J., Durkin, A. Scott, Harkins, Derek M., Lorenzi, Hernan, Madupu, Ramana, Sebastian, Yinong, Shrivastava, Susmita, Thiagarajan, Mathangi, Orvis, Joshua, Sundaram, Jaideep P., Crabtree, Jonathon, Galens, Kevin, Zhao, Yongmei, Inman, Jason M., Montgomery, Robert, Schobel, Seth, Galinsky, Kevin, Tanenbaum, David M., Resnick, Adam, Zafar, Nikhat, White, Owen, Sutton, Granger
Publicado em 2010

Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus

por Fedorova, Natalie D., Khaldi, Nora, Joardar, Vinita S., Maiti, Rama, Amedeo, Paolo, Anderson, Michael J., Crabtree, Jonathan, Silva, Joana C., Badger, Jonathan H., Albarraq, Ahmed, Angiuoli, Sam, Bussey, Howard, Bowyer, Paul, Cotty, Peter J., Dyer, Paul S., Egan, Amy, Galens, Kevin, Fraser-Liggett, Claire M., Haas, Brian J., Inman, Jason M., Kent, Richard, Lemieux, Sebastien, Malavazi, Iran, Orvis, Joshua, Roemer, Terry, Ronning, Catherine M., Sundaram, Jaideep P., Sutton, Granger, Turner, Geoff, Venter, J. Craig, White, Owen R., Whitty, Brett R., Youngman, Phil, Wolfe, Kenneth H., Goldman, Gustavo H., Wortman, Jennifer R., Jiang, Bo, Denning, David W., Nierman, William C.
Publicado em 2008

Cassava genome from a wild ancestor to cultivated varieties

por Wang, Wenquan, Feng, Binxiao, Xiao, Jingfa, Xia, Zhiqiang, Zhou, Xincheng, Li, Pinghua, Zhang, Weixiong, Wang, Ying, Møller, Birger Lindberg, Zhang, Peng, Luo, Ming-Cheng, Xiao, Gong, Liu, Jingxing, Yang, Jun, Chen, Songbi, Rabinowicz, Pablo D., Chen, Xin, Zhang, Hong-Bin, Ceballos, Henan, Lou, Qunfeng, Zou, Meiling, Carvalho, Luiz J.C.B., Zeng, Changying, Xia, Jing, Sun, Shixiang, Fu, Yuhua, Wang, Haiyan, Lu, Cheng, Ruan, Mengbin, Zhou, Shuigeng, Wu, Zhicheng, Liu, Hui, Kannangara, Rubini Maya, Jørgensen, Kirsten, Neale, Rebecca Louise, Bonde, Maya, Heinz, Nanna, Zhu, Wenli, Wang, Shujuan, Zhang, Yang, Pan, Kun, Wen, Mingfu, Ma, Ping-An, Li, Zhengxu, Hu, Meizhen, Liao, Wenbin, Hu, Wenbin, Zhang, Shengkui, Pei, Jinli, Guo, Anping, Guo, Jianchun, Zhang, Jiaming, Zhang, Zhengwen, Ye, Jianqiu, Ou, Wenjun, Ma, Yaqin, Liu, Xinyue, Tallon, Luke J., Galens, Kevin, Ott, Sandra, Huang, Jie, Xue, Jingjing, An, Feifei, Yao, Qingqun, Lu, Xiaojing, Fregene, Martin, López-Lavalle, L. Augusto Becerra, Wu, Jiajie, You, Frank M., Chen, Meili, Hu, Songnian, Wu, Guojiang, Zhong, Silin, Ling, Peng, Chen, Yeyuan, Wang, Qinghuang, Liu, Guodao, Liu, Bin, Li, Kaimian, Peng, Ming
Publicado em 2014