Towards Translational Epidemiology: Next-Generation Sequencing and Phylogeography as Epidemiological Mainstays

Por Hepp, Crystal M.
Publicado no mSystems (2019)

Contrasted patterns of evolution of the LINE-1 retrotransposon in perissodactyls: the history of a LINE-1 extinction

Por Sookdeo, Akash, Hepp, Crystal M., Boissinot, Stéphane
Publicado no Mob DNA (2018)

Revisiting the evolution of mouse LINE-1 in the genomic era

Por Sookdeo, Akash, Hepp, Crystal M, McClure, Marcella A, Boissinot, Stéphane
Publicado em 2013

Sample pooling methods for efficient pathogen screening: Practical implications

Por Furstenau, Tara N., Cocking, Jill H., Hepp, Crystal M., Fofanov, Viacheslav Y.
Publicado no PLoS One (2020)

Identifying genetic relationships among tarsier populations in the islands of Bunaken National Park and mainland Sulawesi

Por Sumampow, Thalita Christiani Pingkan, Shekelle, Myron, Beier, Paul, Walker, Faith M., Hepp, Crystal M.
Publicado no PLoS One (2020)

Range-wide genetic analysis of Dermacentor variabilis and its Francisella-like endosymbionts demonstrates phylogeographic concordance between both taxa

Por Kaufman, Emily L., Stone, Nathan E., Scoles, Glen A., Hepp, Crystal M., Busch, Joseph D., Wagner, David M.
Publicado no Parasit Vectors (2018)

Guano exposed: Impact of aerobic conditions on bat fecal microbiota

Por Fofanov, Viacheslav Y., Furstenau, Tara N., Sanchez, Daniel, Hepp, Crystal M., Cocking, Jill, Sobek, Colin, Pagel, Nicole, Walker, Faith, Chambers, Carol L.
Publicado no Ecol Evol (2018)

Health Disparities and Converging Epidemics in Jail Populations: Protocol for a Mixed-Methods Study

Por Trotter II, Robert T, Camplain, Ricky, Eaves, Emery R, Fofanov, Viacheslav Y, Dmitrieva, Natalia O, Hepp, Crystal M, Warren, Meghan, Barrios, Brianna A, Pagel, Nicole, Mayer, Alyssa, Baldwin, Julie A
Publicado no JMIR Res Protoc (2018)

Health disparities in jail populations: Mixed methods and multi-disciplinary community engagement for justice and health impacts

Por Trotter, Robert T., Fofanov, Viacheslav Y., Camplain, Ricky, Arazan, Christine L., Camplain, Carolyn, Eaves, Emery R., Hanabury, Mary, Hepp, Crystal M, Kohlbeck, Bailey S., Lininger, Monica R., Peoples, Marie, Dmitrieva, Natalia O., Baldwin, Julie A.
Publicado no Pract Anthropol (2019)

Temporal phylogeography of Yersinia pestis in Madagascar: Insights into the long-term maintenance of plague

Por Vogler, Amy J., Andrianaivoarimanana, Voahangy, Telfer, Sandra, Hall, Carina M., Sahl, Jason W., Hepp, Crystal M., Centner, Heather, Andersen, Genevieve, Birdsell, Dawn N., Rahalison, Lila, Nottingham, Roxanne, Keim, Paul, Wagner, David M., Rajerison, Minoarisoa
Publicado no PLoS Negl Trop Dis (2017)

Genotyping of Burkholderia mallei from an Outbreak of Glanders in Bahrain Suggests Multiple Introduction Events

Por Scholz, Holger C., Pearson, Talima, Hornstra, Heidie, Projahn, Michaela, Terzioglu, Rahime, Wernery, Renate, Georgi, Enrico, Riehm, Julia M., Wagner, David M., Keim, Paul S., Joseph, Marina, Johnson, Bobby, Kinne, Joerg, Jose, Shanti, Hepp, Crystal M., Witte, Angela, Wernery, Ulrich
Publicado em 2014

Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever

Por Engelthaler, David M., Roe, Chandler C., Hepp, Crystal M., Teixeira, Marcus, Driebe, Elizabeth M., Schupp, James M., Gade, Lalitha, Waddell, Victor, Komatsu, Kenneth, Arathoon, Eduardo, Logemann, Heidi, Thompson, George R., Chiller, Tom, Barker, Bridget, Keim, Paul, Litvintseva, Anastasia P.
Publicado no mBio (2016)

Dating the Cryptococcus gattii Dispersal to the North American Pacific Northwest

Por Roe, Chandler C., Bowers, Jolene, Oltean, Hanna, DeBess, Emilio, Dufresne, Philippe J., McBurney, Scott, Overy, David P., Wanke, Bodo, Lysen, Colleen, Chiller, Tom, Meyer, Wieland, Thompson, George R., Lockhart, Shawn R., Hepp, Crystal M., Engelthaler, David M.
Publicado no mSphere (2018)

NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats

Por Sahl, Jason W., Lemmer, Darrin, Travis, Jason, Schupp, James M., Gillece, John D., Aziz, Maliha, Driebe, Elizabeth M., Drees, Kevin P., Hicks, Nathan D., Williamson, Charles Hall Davis, Hepp, Crystal M., Smith, David Earl, Roe, Chandler, Engelthaler, David M., Wagner, David M., Keim, Paul
Publicado no Microb Genom (2016)

Phylogenetic analysis of West Nile Virus in Maricopa County, Arizona: Evidence for dynamic behavior of strains in two major lineages in the American Southwest

Por Hepp, Crystal M., Cocking, Jill Hager, Valentine, Michael, Young, Steven J., Damian, Dan, Samuels-Crow, Kimberly E., Sheridan, Krystal, Fofanov, Viacheslav Y., Furstenau, Tara N., Busch, Joseph D., Erickson, Daryn E., Lancione, Ryan C., Smith, Kirk, Will, James, Townsend, John, Keim, Paul S., Engelthaler, David M.
Publicado no PLoS One (2018)

Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus

Por Driebe, Elizabeth M., Sahl, Jason W., Roe, Chandler, Bowers, Jolene R., Schupp, James M., Gillece, John D., Kelley, Erin, Price, Lance B., Pearson, Talima R., Hepp, Crystal M., Brzoska, Pius M., Cummings, Craig A., Furtado, Manohar R., Andersen, Paal S., Stegger, Marc, Engelthaler, David M., Keim, Paul S.
Publicado no PLoS One (2015)

Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity

Por Bolyen, Evan, Dillon, Matthew R., Bokulich, Nicholas A., Ladner, Jason T., Larsen, Brendan B., Hepp, Crystal M., Lemmer, Darrin, Sahl, Jason W., Sanchez, Andrew, Holdgraf, Chris, Sewell, Chris, Choudhury, Aakash G., Stachurski, John, McKay, Matthew, Simard, Anthony, Engelthaler, David M., Worobey, Michael, Keim, Paul, Caporaso, J. Gregory
Publicado no F1000Res (2020)

Pathogen to commensal? Longitudinal within-host population dynamics, evolution, and adaptation during a chronic >16-year Burkholderia pseudomallei infection

Por Pearson, Talima, Sahl, Jason W., Hepp, Crystal M., Handady, Karthik, Hornstra, Heidie, Vazquez, Adam J., Settles, Erik, Mayo, Mark, Kaestli, Mirjam, Williamson, Charles H. D., Price, Erin P., Sarovich, Derek S., Cook, James M., Wolken, Spenser R., Bowen, Richard A., Tuanyok, Apichai, Foster, Jeffrey T., Drees, Kevin P., Kidd, Timothy J., Bell, Scott C., Currie, Bart J., Keim, Paul
Publicado no PLoS Pathog (2020)

An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona

Por Ladner, Jason T., Larsen, Brendan B., Bowers, Jolene R., Hepp, Crystal M., Bolyen, Evan, Folkerts, Megan, Sheridan, Krystal, Pfeiffer, Ashlyn, Yaglom, Hayley, Lemmer, Darrin, Sahl, Jason W., Kaelin, Emily A., Maqsood, Rabia, Bokulich, Nicholas A., Quirk, Grace, Watts, Thomas D., Komatsu, Kenneth K., Waddell, Victor, Lim, Efrem S., Caporaso, J. Gregory, Engelthaler, David M., Worobey, Michael, Keim, Paul
Publicado no mBio (2020)