NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats

Whole-genome sequencing (WGS) of bacterial isolates has become standard practice in many laboratories. Applications for WGS analysis include phylogeography and molecular epidemiology, using single nucleotide polymorphisms (SNPs) as the unit of evolution. NASP was developed as a reproducible method t...

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Detalhes bibliográficos
Publicado no:Microb Genom
Main Authors: Sahl, Jason W., Lemmer, Darrin, Travis, Jason, Schupp, James M., Gillece, John D., Aziz, Maliha, Driebe, Elizabeth M., Drees, Kevin P., Hicks, Nathan D., Williamson, Charles Hall Davis, Hepp, Crystal M., Smith, David Earl, Roe, Chandler, Engelthaler, David M., Wagner, David M., Keim, Paul
Formato: Artigo
Idioma:Inglês
Publicado em: Microbiology Society 2016
Assuntos:
Methods Paper
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC5320593/
https://ncbi.nlm.nih.gov/pubmed/28348869
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1099/mgen.0.000074
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