BFL: a node and edge betweenness based fast layout algorithm for large scale networks

door Hashimoto, Tatsunori B, Nagasaki, Masao, Kojima, Kaname, Miyano, Satoru
Gepubliceerd in 2009

Tree preserving embedding

door Shieh, Albert D., Hashimoto, Tatsunori B., Airoldi, Edoardo M.
Gepubliceerd in 2011

Universal Count Correction for High-Throughput Sequencing

door Hashimoto, Tatsunori B., Edwards, Matthew D., Gifford, David K.
Gepubliceerd in 2014

GERV: a statistical method for generative evaluation of regulatory variants for transcription factor binding

door Zeng, Haoyang, Hashimoto, Tatsunori, Kang, Daniel D., Gifford, David K.
Gepubliceerd in Bioinformatics (2016)

Cloning-free CRISPR

door Arbab, Mandana, Srinivasan, Sharanya, Hashimoto, Tatsunori, Geijsen, Niels, Sherwood, Richard I.
Gepubliceerd in Stem Cell Reports (2015)

DNase-capture reveals differential transcription factor binding modalities

door Kang, Daniel, Sherwood, Richard, Barkal, Amira, Hashimoto, Tatsunori, Engstrom, Logan, Gifford, David
Gepubliceerd in PLoS One (2017)

Lineage-based identification of cellular states and expression programs

door Hashimoto, Tatsunori, Jaakkola, Tommi, Sherwood, Richard, Mazzoni, Esteban O., Wichterle, Hynek, Gifford, David
Gepubliceerd in 2012

Cas9 Functionally Opens Chromatin

door Barkal, Amira A., Srinivasan, Sharanya, Hashimoto, Tatsunori, Gifford, David K., Sherwood, Richard I.
Gepubliceerd in PLoS One (2016)

Inferring Multidimensional Rates of Aging from Cross-Sectional Data

door Pierson, Emma, Koh, Pang Wei, Hashimoto, Tatsunori, Koller, Daphne, Leskovec, Jure, Eriksson, Nicholas, Liang, Percy
Gepubliceerd in Proc Mach Learn Res (2019)

Quantifying Condition-Dependent Intracellular Protein Levels Enables High-Precision Fitness Estimates

door Geiler-Samerotte, Kerry A., Hashimoto, Tatsunori, Dion, Michael F., Budnik, Bogdan A., Airoldi, Edoardo M., Drummond, D. Allan
Gepubliceerd in 2013

Correction: Quantifying Condition-Dependent Intracellular Protein Levels Enables High-Precision Fitness Estimates

door Geiler-Samerotte, Kerry A., Hashimoto, Tatsunori, Dion, Michael F., Budnik, Bogdan A., Airoldi, Edoardo M., Drummond, D. Allan
Gepubliceerd in 2013

Discovery of non-directional and directional pioneer transcription factors by modeling DNase profile magnitude and shape

door Sherwood, Richard I, Hashimoto, Tatsunori, O'Donnell, Charles W, Lewis, Sophia, Barkal, Amira A, van Hoff, John Peter, Karun, Vivek, Jaakkola, Tommi, Gifford, David K
Gepubliceerd in 2014

A synergistic DNA logic predicts genome-wide chromatin accessibility

door Hashimoto, Tatsunori, Sherwood, Richard I., Kang, Daniel D., Rajagopal, Nisha, Barkal, Amira A., Zeng, Haoyang, Emons, Bart J.M., Srinivasan, Sharanya, Jaakkola, Tommi, Gifford, David K.
Gepubliceerd in Genome Res (2016)