Computational inference of transcriptional regulatory networks from expression profiling and transcription factor binding site identification

Por Haverty, Peter M., Hansen, Ulla, Weng, Zhiping
Publicado em 2004

CARRIE web service: automated transcriptional regulatory network inference and interactive analysis

Por Haverty, Peter M., Frith, Martin C., Weng, Zhiping
Publicado em 2004

MotifViz: an analysis and visualization tool for motif discovery

Por Fu, Yutao, Frith, Martin C., Haverty, Peter M., Weng, Zhiping
Publicado em 2004

High-resolution analysis of copy number alterations and associated expression changes in ovarian tumors

Por Haverty, Peter M, Hon, Lawrence S, Kaminker, Joshua S, Chant, John, Zhang, Zemin
Publicado em 2009

Super-enhancer acquisition drives oncogene expression in triple negative breast cancer

Por Raisner, Ryan, Bainer, Russell, Haverty, Peter M., Benedetti, Kelli L., Gascoigne, Karen E.
Publicado no PLoS One (2020)

Application of Mass Spectrometry Profiling to Establish Brusatol as an Inhibitor of Global Protein Synthesis

Por Vartanian, Steffan, Ma, Taylur P., Lee, James, Haverty, Peter M., Kirkpatrick, Donald S., Yu, Kebing, Stokoe, David
Publicado no Mol Cell Proteomics (2016)

MBASED: allele-specific expression detection in cancer tissues and cell lines

Por Mayba, Oleg, Gilbert, Houston N, Liu, Jinfeng, Haverty, Peter M, Jhunjhunwala, Suchit, Jiang, Zhaoshi, Watanabe, Colin, Zhang, Zemin
Publicado em 2014

HugeIndex: a database with visualization tools for high-density oligonucleotide array data from normal human tissues

Por Haverty, Peter M., Weng, Zhiping, Best, Nathan L., Auerbach, Kenneth R., Hsiao, Li-Li, Jensen, Roderick V., Gullans, Steven R.
Publicado em 2002

Large-scale integrative network-based analysis identifies common pathways disrupted by copy number alterations across cancers

Por Hwang, Tae Hyun, Atluri, Gowtham, Kuang, Rui, Kumar, Vipin, Starr, Timothy, Silverstein, Kevin AT, Haverty, Peter M, Zhang, Zemin, Liu, Jinfeng
Publicado em 2013

Multiple-gene targeting and mismatch tolerance can confound analysis of genome-wide pooled CRISPR screens

Por Fortin, Jean-Philippe, Tan, Jenille, Gascoigne, Karen E., Haverty, Peter M., Forrest, William F., Costa, Michael R., Martin, Scott E.
Publicado no Genome Biol (2019)

Human Biosample Authentication Using the High-Throughput, Cost-Effective SNPtrace(TM) System

Por Liang-Chu, May M. Y., Yu, Mamie, Haverty, Peter M., Koeman, Julie, Ziegle, Janet, Lee, Marie, Bourgon, Richard, Neve, Richard M.
Publicado no PLoS One (2015)

p21-activated kinase 1: PAK'ed with potential

Por Ong, Christy C., Jubb, Adrian M., Zhou, Wei, Haverty, Peter M., Harris, Adrian L., Belvin, Marcia, Friedman, Lori S., Koeppen, Hartmut, Hoeflich, Klaus P.
Publicado em 2011

Germline genetic polymorphisms influence tumor gene expression and immune cell infiltration

Por Lim, Yoong Wearn, Chen-Harris, Haiyin, Mayba, Oleg, Lianoglou, Steve, Wuster, Arthur, Bhangale, Tushar, Khan, Zia, Mariathasan, Sanjeev, Daemen, Anneleen, Reeder, Jens, Haverty, Peter M., Forrest, William F., Brauer, Matthew, Mellman, Ira, Albert, Matthew L.
Publicado no Proc Natl Acad Sci U S A (2018)

INTEGRATIVE ANALYSIS OF TWO CELL LINES DERIVED FROM A NON-SMALL-LUNG CANCER PATIENT – A PANOMICS APPROACH

Por MAYBA, OLEG, GNAD, FLORIAN, PEYTON, MICHAEL, ZHANG, FAN, WALTER, KIMBERLY, DU, PAN, HUNTLEY, MELANIE A., JIANG, ZHAOSHI, LIU, JINFENG, HAVERTY, PETER M., GENTLEMAN, ROBERT C., LI, RUIQIANG, MINNA, JOHN D., LI, YINGRUI, SHAMES, DAVID S., ZHANG, ZEMIN
Publicado em 2014

Targeting p21-activated kinase 1 (PAK1) to induce apoptosis of tumor cells

Por Ong, Christy C., Jubb, Adrian M., Haverty, Peter M., Zhou, Wei, Tran, Victoria, Truong, Tom, Turley, Helen, O'Brien, Tom, Vucic, Domagoj, Harris, Adrian L., Belvin, Marcia, Friedman, Lori S., Blackwood, Elizabeth M., Koeppen, Hartmut, Hoeflich, Klaus P.
Publicado em 2011

Transposable element expression in tumors is associated with immune infiltration and increased antigenicity

Por Kong, Yu, Rose, Christopher M., Cass, Ashley A., Williams, Alexander G., Darwish, Martine, Lianoglou, Steve, Haverty, Peter M., Tong, Ann-Jay, Blanchette, Craig, Albert, Matthew L., Mellman, Ira, Bourgon, Richard, Greally, John, Jhunjhunwala, Suchit, Chen-Harris, Haiyin
Publicado no Nat Commun (2019)

Active PI3K Pathway Causes an Invasive Phenotype Which Can Be Reversed or Promoted by Blocking the Pathway at Divergent Nodes

Por Wallin, Jeffrey J., Guan, Jane, Edgar, Kyle A., Zhou, Wei, Francis, Ross, Torres, Anthony C., Haverty, Peter M., Eastham-Anderson, Jeffrey, Arena, Sabrina, Bardelli, Alberto, Griffin, Sue, Goodall, John E., Grimshaw, Kyla M., Hoeflich, Klaus P., Torrance, Christopher, Belvin, Marcia, Friedman, Lori S.
Publicado em 2012

Synovial phenotypes in rheumatoid arthritis correlate with response to biologic therapeutics

Por Dennis, Glynn, Holweg, Cécile TJ, Kummerfeld, Sarah K, Choy, David F, Setiadi, A Francesca, Hackney, Jason A, Haverty, Peter M, Gilbert, Houston, Lin, Wei Yu, Diehl, Lauri, Fischer, S, Song, An, Musselman, David, Klearman, Micki, Gabay, Cem, Kavanaugh, Arthur, Endres, Judith, Fox, David A, Martin, Flavius, Townsend, Michael J
Publicado em 2014

A transcriptional MAPK Pathway Activity Score (MPAS) is a clinically relevant biomarker in multiple cancer types

Por Wagle, Marie-Claire, Kirouac, Daniel, Klijn, Christiaan, Liu, Bonnie, Mahajan, Shilpi, Junttila, Melissa, Moffat, John, Merchant, Mark, Huw, Ling, Wongchenko, Matthew, Okrah, Kwame, Srinivasan, Shrividhya, Mounir, Zineb, Sumiyoshi, Teiko, Haverty, Peter M., Yauch, Robert L., Yan, Yibing, Kabbarah, Omar, Hampton, Garret, Amler, Lukas, Ramanujan, Saroja, Lackner, Mark R., Huang, Shih-Min A.
Publicado no NPJ Precis Oncol (2018)

Combined MEK and ERK inhibition overcomes therapy-mediated pathway reactivation in RAS mutant tumors

Por Merchant, Mark, Moffat, John, Schaefer, Gabriele, Chan, Jocelyn, Wang, Xi, Orr, Christine, Cheng, Jason, Hunsaker, Thomas, Shao, Lily, Wang, Stephanie J., Wagle, Marie-Claire, Lin, Eva, Haverty, Peter M., Shahidi-Latham, Sheerin, Ngu, Hai, Solon, Margaret, Eastham-Anderson, Jeffrey, Koeppen, Hartmut, Huang, Shih-Min A., Schwarz, Jacob, Belvin, Marcia, Kirouac, Daniel, Junttila, Melissa R.
Publicado no PLoS One (2017)