How DNA microarrays and expression profiling will affect clinical practice

Por Friend, Stephen H
Publicado em 1999

The Stream Algorithm: Computationally Efficient Ridge-Regression via Bayesian Model Averaging, and Applications to Pharmacogenomic Prediction of Cancer Cell Line Sensitivity

Por Neto, Elias Chaibub, Jang, In Sock, Friend, Stephen H., Margolin, Adam A.
Publicado em 2014

SYSTEMATIC ASSESSMENT OF ANALYTICAL METHODS FOR DRUG SENSITIVITY PREDICTION FROM CANCER CELL LINE DATA

Por Jang, In Sock, Neto, Elias Chaibub, Guinney, Justin, Friend, Stephen H., Margolin, Adam A.
Publicado em 2014

Expression profiling predicts outcome in breast cancer

Por van 't Veer, Laura J, Dai, Hongyue, van de Vijver, Marc J, He, Yudong D, Hart, Augustinus AM, Bernards, René, Friend, Stephen H
Publicado em 2003

Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas

Por Omberg, Larsson, Ellrott, Kyle, Yuan, Yuan, Kandoth, Cyriac, Wong, Chris, Kellen, Michael R, Friend, Stephen H, Stuart, Josh, Liang, Han, Margolin, Adam A
Publicado em 2013

Impact of bioinformatic procedures in the development and translation of high-throughput molecular classifiers in Oncology

Por Ferté, Charles, Trister, Andrew D., Huang, Erich, Bot, Brian M., Guinney, Justin, Commo, Frederic, Sieberts, Solveig, André, Fabrice, Besse, Benjamin, Soria, Jean-Charles, Friend, Stephen H.
Publicado em 2013

Developing predictive molecular maps of human disease through community-based modeling

Por Derry, Jonathan M J, Mangravite, Lara M, Suver, Christine, Furia, Matthew D, Henderson, David, Schildwachter, Xavier, Bot, Brian, Izant, Jonathan, Sieberts, Solveig K, Kellen, Michael R, Friend, Stephen H
Publicado em 2012

The mPower study, Parkinson disease mobile data collected using ResearchKit

Por Bot, Brian M., Suver, Christine, Neto, Elias Chaibub, Kellen, Michael, Klein, Arno, Bare, Christopher, Doerr, Megan, Pratap, Abhishek, Wilbanks, John, Dorsey, E. Ray, Friend, Stephen H., Trister, Andrew D.
Publicado no Sci Data (2016)

Título não disponível

Por Bernards, Rene, Shackleford, Gregory M., Gerber, Monica R., Horowitz, Jonathan M., Friend, Stephen H., Schartl, Manfred, Bogenmann, Emil, Rapaport, Joyce M., McGee, Terry, Dryja, Thaddeus P., Weinberg, Robert A.
Publicado em 2006

Global optimization of somatic variant identification in cancer genomes with a global community challenge

Por Boutros, Paul C, Ewing, Adam D, Ellrott, Kyle, Norman, Thea C, Dang, Kristen K, Hu, Yin, Kellen, Michael R, Suver, Christine, Bare, J Christopher, Stein, Lincoln D, Spellman, Paul T, Stolovitzky, Gustavo, Friend, Stephen H, Margolin, Adam A, Stuart, Joshua M
Publicado em 2014

Small Interfering RNA Screens Reveal Enhanced Cisplatin Cytotoxicity in Tumor Cells Having both BRCA Network and TP53 Disruptions

Por Bartz, Steven R., Zhang, Zhan, Burchard, Julja, Imakura, Maki, Martin, Melissa, Palmieri, Anthony, Needham, Rachel, Guo, Jie, Gordon, Marcia, Chung, Namjin, Warrener, Paul, Jackson, Aimee L., Carleton, Michael, Oatley, Melissa, Locco, Louis, Santini, Francesca, Smith, Todd, Kunapuli, Priya, Ferrer, Marc, Strulovici, Berta, Friend, Stephen H., Linsley, Peter S.
Publicado em 2006

Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection

Por Ewing, Adam D, Houlahan, Kathleen E, Hu, Yin, Ellrott, Kyle, Caloian, Cristian, Yamaguchi, Takafumi N, Bare, J Christopher, P’ng, Christine, Waggott, Daryl, Sabelnykova, Veronica Y, Kellen, Michael R, Norman, Thea C, Haussler, David, Friend, Stephen H, Stolovitzky, Gustavo, Margolin, Adam A, Stuart, Joshua M, Boutros, Paul C
Publicado no Nat Methods (2015)

Crowdsourcing genetic prediction of clinical utility in the Rheumatoid Arthritis Responder Challenge

Por Plenge, Robert M., Greenberg, Jeffrey D., Mangravite, Lara M., Derry, Jonathan M. J., Stahl, Eli A., Coenen, Marieke J. H., Barton, Anne, Padyukov, Leonid, Klareskog, Lars, Gregersen, Peter K., Mariette, Xavier, Moreland, Larry W., Bridges, S Louis, de Vries, Niek, Huizinga, Tom W. J., Guchelaar, Henk-Jan, Friend, Stephen H., Stolovitzky, Gustavo
Publicado em 2013

A Crowdsourcing Approach to Developing and Assessing Prediction Algorithms for AML Prognosis

Por Noren, David P., Long, Byron L., Norel, Raquel, Rrhissorrakrai, Kahn, Hess, Kenneth, Hu, Chenyue Wendy, Bisberg, Alex J., Schultz, Andre, Engquist, Erik, Liu, Li, Lin, Xihui, Chen, Gregory M., Xie, Honglei, Hunter, Geoffrey A. M., Boutros, Paul C., Stepanov, Oleg, Norman, Thea, Friend, Stephen H., Stolovitzky, Gustavo, Kornblau, Steven, Qutub, Amina A.
Publicado no PLoS Comput Biol (2016)

Improving Breast Cancer Survival Analysis through Competition-Based Multidimensional Modeling

Por Bilal, Erhan, Dutkowski, Janusz, Guinney, Justin, Jang, In Sock, Logsdon, Benjamin A., Pandey, Gaurav, Sauerwine, Benjamin A., Shimoni, Yishai, Moen Vollan, Hans Kristian, Mecham, Brigham H., Rueda, Oscar M., Tost, Jorg, Curtis, Christina, Alvarez, Mariano J., Kristensen, Vessela N., Aparicio, Samuel, Børresen-Dale, Anne-Lise, Caldas, Carlos, Califano, Andrea, Friend, Stephen H., Ideker, Trey, Schadt, Eric E., Stolovitzky, Gustavo A., Margolin, Adam A.
Publicado em 2013

Systematic Analysis of Challenge-Driven Improvements in Molecular Prognostic Models for Breast Cancer

Por Margolin, Adam A., Bilal, Erhan, Huang, Erich, Norman, Thea C., Ottestad, Lars, Mecham, Brigham H., Sauerwine, Ben, Kellen, Michael R., Mangravite, Lara M., Furia, Matthew D., Vollan, Hans Kristian Moen, Rueda, Oscar M., Guinney, Justin, Deflaux, Nicole A., Hoff, Bruce, Schildwachter, Xavier, Russnes, Hege G., Park, Daehoon, Vang, Veronica O., Pirtle, Tyler, Youseff, Lamia, Citro, Craig, Curtis, Christina, Kristensen, Vessela N., Hellerstein, Joseph, Friend, Stephen H., Stolovitzky, Gustavo, Aparicio, Samuel, Caldas, Carlos, Børresen-Dale, Anne-Lise
Publicado em 2013

The Consensus Molecular Subtypes of Colorectal Cancer

Por Guinney, Justin, Dienstmann, Rodrigo, Wang, Xin, de Reyniès, Aurélien, Schlicker, Andreas, Soneson, Charlotte, Marisa, Laetitia, Roepman, Paul, Nyamundanda, Gift, Angelino, Paolo, Bot, Brian M., Morris, Jeffrey S., Simon, Iris M., Gerster, Sarah, Fessler, Evelyn, de Sousa e Melo, Felipe, Missiaglia, Edoardo, Ramay, Hena, Barras, David, Homicsko, Krisztian, Maru, Dipen, Manyam, Ganiraju C., Broom, Bradley, Boige, Valerie, Perez-Villamil, Beatriz, Laderas, Ted, Salazar, Ramon, Gray, Joe W., Hanahan, Douglas, Tabernero, Josep, Bernards, Rene, Friend, Stephen H., Laurent-Puig, Pierre, Medema, Jan Paul, Sadanandam, Anguraj, Wessels, Lodewyk, Delorenzi, Mauro, Kopetz, Scott, Vermeulen, Louis, Tejpar, Sabine
Publicado no Nat Med (2015)