MIRMMR: binary classification of microsatellite instability using methylation and mutations

by Foltz, Steven M, Liang, Wen-Wei, Xie, Mingchao, Ding, Li
Published in Bioinformatics (2017)

Myosoft: An automated muscle histology analysis tool using machine learning algorithm utilizing FIJI/ImageJ software

by Encarnacion-Rivera, Lucas, Foltz, Steven, Hartzell, H. Criss, Choo, Hyojung
Published in PLoS One (2020)

Geographic Analysis of Urologist Density and Prostate Cancer Mortality in the United States

by Yao, Nengliang, Foltz, Steven M., Odisho, Anobel Y., Wheeler, David C.
Published in PLoS One (2015)

ANO5 ensures trafficking of annexins in wounded myofibers

by Foltz, Steven J., Cui, Yuan Yuan, Choo, Hyojung J., Hartzell, H. Criss
Published in J Cell Biol (2021)

Four-week rapamycin treatment improves muscular dystrophy in a fukutin-deficient mouse model of dystroglycanopathy

by Foltz, Steven J., Luan, Junna, Call, Jarrod A., Patel, Ankit, Peissig, Kristen B., Fortunato, Marisa J., Beedle, Aaron M.
Published in Skelet Muscle (2016)

Abnormal Skeletal Muscle Regeneration plus Mild Alterations in Mature Fiber Type Specification in Fktn-Deficient Dystroglycanopathy Muscular Dystrophy Mice

by Foltz, Steven J., Modi, Jill N., Melick, Garrett A., Abousaud, Marin I., Luan, Junna, Fortunato, Marisa J., Beedle, Aaron M.
Published in PLoS One (2016)

AAV-mediated transfer of FKRP shows therapeutic efficacy in a murine model but requires control of gene expression

by Gicquel, Evelyne, Maizonnier, Natacha, Foltz, Steven J., Martin, William J., Bourg, Nathalie, Svinartchouk, Fedor, Charton, Karine, Beedle, Aaron M., Richard, Isabelle
Published in Hum Mol Genet (2017)

Mouse fukutin deletion impairs dystroglycan processing and recapitulates muscular dystrophy

by Beedle, Aaron M., Turner, Amy J., Saito, Yoshiaki, Lueck, John D., Foltz, Steven J., Fortunato, Marisa J., Nienaber, Patricia M., Campbell, Kevin P.
Published 2012

Evolution and structure of clinically relevant gene fusions in multiple myeloma

by Foltz, Steven M., Gao, Qingsong, Yoon, Christopher J., Sun, Hua, Yao, Lijun, Li, Yize, Jayasinghe, Reyka G., Cao, Song, King, Justin, Kohnen, Daniel R., Fiala, Mark A., Ding, Li, Vij, Ravi
Published in Nat Commun (2020)

Systematic Discovery of Complex Indels in Human Cancers

by Ye, Kai, Wang, Jiayin, Jayasinghe, Reyka, Lameijer, Eric-Wubbo, McMichael, Joshua F., Ning, Jie, McLellan, Michael D., Xie, Mingchao, Cao, Song, Yellapantula, Venkata, Huang, Kuan-lin, Scott, Adam, Foltz, Steven, Niu, Beifang, Johnson, Kimberly J., Moed, Matthijs, Slagboom, P. Eline, Chen, Feng, Wendl, Michael C., Ding, Li
Published in Nat Med (2015)

Driver Fusions and Their Implications in the Development and Treatment of Human Cancers

by Gao, Qingsong, Liang, Wen-Wei, Foltz, Steven M., Mutharasu, Gnanavel, Jayasinghe, Reyka G., Cao, Song, Liao, Wen-Wei, Reynolds, Sheila M., Wyczalkowski, Matthew A., Yao, Lijun, Yu, Lihua, Sun, Sam Q., Chen, Ken, Lazar, Alexander J., Fields, Ryan C., Wendl, Michael C., Van Tine, Brian A., Vij, Ravi, Chen, Feng, Nykter, Matti, Shmulevich, Ilya, Ding, Li
Published in Cell Rep (2018)

Co-evolution of tumor and immune cells during progression of multiple myeloma

by Liu, Ruiyang, Gao, Qingsong, Foltz, Steven M., Fowles, Jared S., Yao, Lijun, Wang, Julia Tianjiao, Cao, Song, Sun, Hua, Wendl, Michael C., Sethuraman, Sunantha, Weerasinghe, Amila, Rettig, Michael P., Storrs, Erik P., Yoon, Christopher J., Wyczalkowski, Matthew A., McMichael, Joshua F., Kohnen, Daniel R., King, Justin, Goldsmith, Scott R., O’Neal, Julie, Fulton, Robert S., Fronick, Catrina C., Ley, Timothy J., Jayasinghe, Reyka G., Fiala, Mark A., Oh, Stephen T., DiPersio, John F., Vij, Ravi, Ding, Li
Published in Nat Commun (2021)

Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability

by McDermott, Jason E., Arshad, Osama A., Petyuk, Vladislav A., Fu, Yi, Gritsenko, Marina A., Clauss, Therese R., Moore, Ronald J., Schepmoes, Athena A., Zhao, Rui, Monroe, Matthew E., Schnaubelt, Michael, Tsai, Chia-Feng, Payne, Samuel H., Huang, Chen, Wang, Liang-Bo, Foltz, Steven, Wyczalkowski, Matthew, Wu, Yige, Song, Ehwang, Brewer, Molly A., Thiagarajan, Mathangi, Kinsinger, Christopher R., Robles, Ana I., Boja, Emily S., Rodriguez, Henry, Chan, Daniel W., Zhang, Bing, Zhang, Zhen, Ding, Li, Smith, Richard D., Liu, Tao, Rodland, Karin D.
Published in Cell Rep Med (2020)

Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability

by McDermott, Jason E., Arshad, Osama A., Petyuk, Vladislav A., Fu, Yi, Gritsenko, Marina A., Clauss, Therese R., Moore, Ronald J., Schepmoes, Athena A., Zhao, Rui, Monroe, Matthew E., Schnaubelt, Michael, Tsai, Chia-Feng, Payne, Samuel H., Huang, Chen, Wang, Liang-Bo, Foltz, Steven, Wyczalkowski, Matthew, Wu, Yige, Song, Ehwang, Brewer, Molly A., Thiagarajan, Mathangi, Kinsinger, Christopher R., Robles, Ana I., Boja, Emily S., Rodriguez, Henry, Chan, Daniel W., Zhang, Bing, Zhang, Zhen, Ding, Li, Smith, Richard D., Liu, Tao, Rodland, Karin D.
Published in Cell Rep Med (2020)

Oncogenic Signaling Pathways in The Cancer Genome Atlas

by Sanchez-Vega, Francisco, Mina, Marco, Armenia, Joshua, Chatila, Walid K., Luna, Augustin, La, Konnor C., Dimitriadoy, Sofia, Liu, David L., Kantheti, Havish S., Saghafinia, Sadegh, Chakravarty, Debyani, Daian, Foysal, Gao, Qingsong, Bailey, Matthew H., Liang, Wen-Wei, Foltz, Steven M., Shmulevich, Ilya, Ding, Li, Heins, Zachary, Ochoa, Angelica, Gross, Benjamin, Gao, Jianjiong, Zhang, Hongxin, Kundra, Ritika, Kandoth, Cyriac, Bahceci, Istemi, Dervishi, Leonard, Dogrusoz, Ugur, Zhou, Wanding, Shen, Hui, Laird, Peter W., Way, Gregory P., Greene, Casey S., Liang, Han, Xiao, Yonghong, Wang, Chen, Iavarone, Antonio, Berger, Alice H., Bivona, Trever G., Lazar, Alexander J., Hammer, Gary D., Giordano, Thomas, Kwong, Lawrence N., McArthur, Grant, Huang, Chenfei, Tward, Aaron D., Frederick, Mitchell J., McCormick, Frank, Meyerson, Matthew, Van Allen, Eliezer M., Cherniack, Andrew D., Ciriello, Giovanni, Sander, Chris, Schultz, Nikolaus
Published in Cell (2018)

Rare, low frequency, and common coding variants in CHRNA5 and their contribution to nicotine dependence in European and African Americans

by Olfson, Emily, Saccone, Nancy L., Johnson, Eric O., Chen, Li-Shiun, Culverhouse, Robert, Doheny, Kimberly, Foltz, Steven M., Fox, Louis, Gogarten, Stephanie M., Hartz, Sarah, Hetrick, Kurt, Laurie, Cathy C., Marosy, Beth, Amin, Najaf, Arnett, Donna, Barr, R. Graham, Bartz, Traci M., Bertelsen, Sarah, Borecki, Ingrid B., Brown, Michael R., Chasman, Daniel I., van Duijn, Cornelia M., Feitosa, Mary F., Fox, Ervin R., Franceschini, Nora, Franco, Oscar H., Grove, Megan L., Guo, Xiuqing, Hofman, Albert, Kardia, Sharon L.R., Morrison, Alanna C., Musani, Solomon K., Psaty, Bruce M., Rao, D.C., Reiner, Alex P., Rice, Kenneth, Ridker, Paul M., Rose, Lynda M., Schick, Ursula M., Schwander, Karen, Uitterlinden, Andre G., Vojinovic, Dina, Wang, Jen-Chyong, Ware, Erin B., Wilson, Gregory, Yao, Jie, Zhao, Wei, Breslau, Naomi, Hatsukami, Dorothy, Stitzel, Jerry A., Rice, John, Goate, Alison, Bierut, Laura J.
Published in Mol Psychiatry (2015)