A high-performance computing toolset for relatedness and principal component analysis of SNP data

Por Zheng, Xiuwen, Levine, David, Shen, Jess, Gogarten, Stephanie M., Laurie, Cathy, Weir, Bruce S.
Publicado em 2012

SeqArray—a storage-efficient high-performance data format for WGS variant calls

Por Zheng, Xiuwen, Gogarten, Stephanie M, Lawrence, Michael, Stilp, Adrienne, Conomos, Matthew P, Weir, Bruce S, Laurie, Cathy, Levine, David
Publicado no Bioinformatics (2017)

Local Ancestry Inference in a Large US-Based Hispanic/Latino Study: Hispanic Community Health Study/Study of Latinos (HCHS/SOL)

Por Browning, Sharon R., Grinde, Kelsey, Plantinga, Anna, Gogarten, Stephanie M., Stilp, Adrienne M., Kaplan, Robert C., Avilés-Santa, M. Larissa, Browning, Brian L., Laurie, Cathy C.
Publicado no G3 (Bethesda) (2016)

Meta-analysis of genome-wide association studies with correlated individuals: application to the Hispanic Community Health Study/Study of Latinos (HCHS/SOL)

Por Sofer, Tamar, Shaffer, John R., Graff, Misa, Qi, Qibin, Stilp, Adrienne M., Gogarten, Stephanie M., North, Kari E., Isasi, Carmen R., Laurie, Cathy C., Szpiro, Adam A.
Publicado no Genet Epidemiol (2016)

Genetic variation near IRS1 is associated with adiposity and a favorable metabolic profile in US Hispanics/Latinos

Por Qi, Qibin, Gogarten, Stephanie M., Emery, Leslie S., Louie, Tin, Stilp, Adrienne, Cai, Jianwen, Schneiderman, Neil, Avilés-Santa, M. Larissa, Kaplan, Robert C., North, Kari E., Laurie, Cathy C., Loos, Ruth J.F., Isasi, Carmen R.
Publicado no Obesity (Silver Spring) (2016)

Interplay of Genetic Risk Factors (CHRNA5-CHRNA3-CHRNB4) and Cessation Treatments in Smoking Cessation Success

Por Chen, Li-Shiun, Baker, Timothy B., Piper, Megan E., Breslau, Naomi, Cannon, Dale S., Doheny, Kimberly F., Gogarten, Stephanie M., Johnson, Eric O., Saccone, Nancy L., Wang, Jen C., Weiss, Robert B., Goate, Alison M., Bierut, Laura Jean
Publicado em 2012

GWASTools: an R/Bioconductor package for quality control and analysis of genome-wide association studies

Por Gogarten, Stephanie M., Bhangale, Tushar, Conomos, Matthew P., Laurie, Cecelia A., McHugh, Caitlin P., Painter, Ian, Zheng, Xiuwen, Crosslin, David R., Levine, David, Lumley, Thomas, Nelson, Sarah C., Rice, Kenneth, Shen, Jess, Swarnkar, Rohit, Weir, Bruce S., Laurie, Cathy C.
Publicado em 2012

Genetic Associations with Plasma B12, B6, and Folate Levels in an Ischemic Stroke Population from the Vitamin Intervention for Stroke Prevention (VISP) Trial

Por Keene, Keith L., Chen, Wei-Min, Chen, Fang, Williams, Stephen R., Elkhatib, Stacey D., Hsu, Fang-Chi, Mychaleckyj, Josyf C., Doheny, Kimberly F., Pugh, Elizabeth W., Ling, Hua, Laurie, Cathy C., Gogarten, Stephanie M., Madden, Ebony B., Worrall, Bradford B., Sale, Michele M.
Publicado em 2014

A Fully-Adjusted Two-Stage Procedure for Rank Normalization in Genetic Association Studies

Por Sofer, Tamar, Zheng, Xiuwen, Gogarten, Stephanie M., Laurie, Cecelia A., Grinde, Kelsey, Shaffer, John R., Shungin, Dmitry, O’Connell, Jeffrey R., Durazo-Arvizo, Ramon A., Raffield, Laura, Lange, Leslie, Musani, Solomon, Vasan, Ramachandran S., Cupples, L. Adrienne, Reiner, Alexander P., Laurie, Cathy C., Rice, Kenneth M.
Publicado no Genet Epidemiol (2019)

Genome-Wide Association Study (GWAS) of Generalized Anxiety Symptoms in the Hispanic Community Health Study/Study of Latinos

Por Dunn, Erin C., Sofer, Tamar, Gallo, Linda C., Gogarten, Stephanie M., Kerr, Kathleen F., Chen, Chia-Yen, Stein, Murray B., Ursano, Robert J., Guo, Xiuqing, Jia, Yucheng, Qi, Qibin, Rotter, Jerome I., Argos, Maria, Cai, Jianwen, Penedo, Frank J, Perreira, Krista, Wassertheil-Smoller, Sylvia, Smoller, Jordan W.
Publicado no Am J Med Genet B Neuropsychiatr Genet (2016)

Genome-Wide Meta-Analysis of Homocysteine and Methionine Metabolism Identifies Five One Carbon Metabolism Loci and a Novel Association of ALDH1L1 with Ischemic Stroke

Por Williams, Stephen R., Yang, Qiong, Chen, Fang, Liu, Xuan, Keene, Keith L., Jacques, Paul, Chen, Wei-Min, Weinstein, Galit, Hsu, Fang-Chi, Beiser, Alexa, Wang, Liewei, Bookman, Ebony, Doheny, Kimberly F., Wolf, Philip A., Zilka, Michelle, Selhub, Jacob, Nelson, Sarah, Gogarten, Stephanie M., Worrall, Bradford B., Seshadri, Sudha, Sale, Michèle M.
Publicado em 2014

Shared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke

Por Williams, Stephen R., Hsu, Fang-Chi, Keene, Keith L., Chen, Wei-Min, Nelson, Sarah, Southerland, Andrew M., Madden, Ebony B., Coull, Bruce, Gogarten, Stephanie M., Furie, Karen L., Dzhivhuho, Godfrey, Rowles, Joe L., Mehndiratta, Prachi, Malik, Rainer, Dupuis, Josée, Lin, Honghuang, Seshadri, Sudha, Rich, Stephen S., Sale, Michèle M., Worrall, Bradford B.
Publicado no Neurology (2016)

Genome-wide association study of depressive symptoms in the Hispanic Community Health Study/Study of Latinos

Por Dunn, Erin C., Sofer, Tamar, Wang, Min-Jung, Soare, Thomas W., Gallo, Linda C., Gogarten, Stephanie M., Kerr, Kathleen F., Chen, Chia-Yen, Stein, Murray B., Ursano, Robert J., Guo, Xiuqing, Jia, Yucheng, Yao, Jie, Rotter, Jerome I., Argos, Maria, Cai, Jianwen, Perreira, Krista, Wassertheil-Smoller, Sylvia, Smoller, Jordan W.
Publicado no J Psychiatr Res (2017)

Genome-Wide Association Study of PR Interval in Hispanics/Latinos Identifies Novel Locus at ID2

Por Seyerle, Amanda A, Lin, Henry J, Gogarten, Stephanie M, Stilp, Adrienne, Méndez-Giraldez, Raul, Soliman, Elsayed Z, Baldassari, Antoine, Graff, Mariaelisa, Heckbert, Susan R, Kerr, Kathleen F, Kooperberg, Charles, Rodriguez, Carlos J, Guo, Xiuqing, Yao, Jie, Sotoodehnia, Nona, Taylor, Kent D, Whitsel, Eric A, Rotter, Jerome I, Laurie, Cathy C., Avery, Christy L
Publicado no Heart (2017)

Multi-Omics Analysis Reveals a HIF Network and Hub Gene EPAS1 Associated with Lung Adenocarcinoma

Por Wang, Zhaoxi, Wei, Yongyue, Zhang, Ruyang, Su, Li, Gogarten, Stephanie M., Liu, Geoffrey, Brennan, Paul, Field, John K., McKay, James D., Lissowska, Jolanta, Swiatkowska, Beata, Janout, Vladimir, Bolca, Ciprian, Kontic, Milica, Scelo, Ghislaine, Zaridze, David, Laurie, Cathy C., Doheny, Kimberly F., Pugh, Elizabeth K., Marosy, Beth A., Hetrick, Kurt N., Xiao, Xiangjun, Pikielny, Claudio, Hung, Rayjean J., Amos, Christopher I., Lin, Xihong, Christiani, David C.
Publicado no EBioMedicine (2018)

Genome-Wide Association Study (GWAS) and Genome-Wide Environment Interaction Study (GWEIS) of Depressive Symptoms in African American and Hispanic/Latina Women

Por Dunn, Erin C., Wiste, Anna, Radmanesh, Farid, Almli, Lynn M., Gogarten, Stephanie M., Sofer, Tamar, Faul, Jessica D., Kardia, Sharon L.R., Smith, Jennifer A., Weir, David R., Zhao, Wei, Soare, Thomas W., Mirza, Saira S., Hek, Karin, Tiemeier, Henning W., Goveas, Joseph S., Sarto, Gloria E., Snively, Beverly M., Cornelis, Marilyn, Koenen, Karestan C., Kraft, Peter, Purcell, Shaun, Ressler, Kerry J., Rosand, Jonathan, Wassertheil-Smoller, Sylvia, Smoller, Jordan W.
Publicado no Depress Anxiety (2016)

GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals

Por Méndez-Giráldez, Raúl, Gogarten, Stephanie M., Below, Jennifer E., Yao, Jie, Seyerle, Amanda A., Highland, Heather M., Kooperberg, Charles, Soliman, Elsayed Z., Rotter, Jerome I., Kerr, Kathleen F., Ryckman, Kelli K., Taylor, Kent D., Petty, Lauren E., Shah, Sanjiv J., Conomos, Matthew P., Sotoodehnia, Nona, Cheng, Susan, Heckbert, Susan R., Sofer, Tamar, Guo, Xiuqing, Whitsel, Eric A., Lin, Henry J., Hanis, Craig L., Laurie, Cathy C., Avery, Christy L.
Publicado no Sci Rep (2017)

Genome-Wide Association Study of Heavy Smoking and Daily/Nondaily Smoking in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL)

Por Saccone, Nancy L, Emery, Leslie S, Sofer, Tamar, Gogarten, Stephanie M, Becker, Diane M, Bottinger, Erwin P, Chen, Li-Shiun, Culverhouse, Robert C, Duan, Weimin, Hancock, Dana B, Hosgood, H Dean, Johnson, Eric O, Loos, Ruth J F, Louie, Tin, Papanicolaou, George, Perreira, Krista M, Rodriquez, Erik J, Schurmann, Claudia, Stilp, Adrienne M, Szpiro, Adam A, Talavera, Gregory A, Taylor, Kent D, Thrasher, James F, Yanek, Lisa R, Laurie, Cathy C, Pérez-Stable, Eliseo J, Bierut, Laura J, Kaplan, Robert C
Publicado no Nicotine Tob Res (2018)

Genome-wide Association Study of Heart Rate and Its Variability in Hispanic/Latino Cohorts

Por Kerr, Kathleen F., Avery, Christy L., Lin, Henry J., Raffield, Laura M., Zhang, Qian S., Browning, Brian L., Browning, Sharon R., Conomos, Matthew P., Gogarten, Stephanie M., Laurie, Cathy C., Sofer, Tamar, Thornton, Timothy A., Hohensee, Chancellor, Jackson, Rebecca D., Kooperberg, Charles, Li, Yun, Méndez-Giráldez, Raúl, Perez, Marco V., Peters, Ulrike, Reiner, Alexander P., Zhang, Zhu-Ming, Yao, Jie, Sotoodehnia, Nona, Taylor, Kent D., Guo, Xiuqing, Lange, Leslie A., Soliman, Elsayed Z., Wilson, James G., Rotter, Jerome I., Heckbert, Susan R., Jain, Deepti, Whitsel, Eric A.
Publicado no Heart Rhythm (2017)

Analysis Commons, A Team Approach to Discovery in a Big-Data Environment for Genetic Epidemiology

Por Brody, Jennifer A., Morrison, Alanna C., Bis, Joshua C., O'Connell, Jeffrey R., Brown, Michael R., Huffman, Jennifer E., Ames, Darren C., Carroll, Andrew, Conomos, Matthew P., Gabriel, Stacey, Gibbs, Richard A., Gogarten, Stephanie M., Gupta, Namrata, Jaquish, Cashell E., Johnson, Andrew D., Lewis, Joshua P., Liu, Xiaoming, Manning, Alisa K., Papanicolaou, George J., Pitsillides, Achilleas N., Rice, Kenneth M., Salerno, William, Sitlani, Colleen M., Smith, Nicholas L., Heckbert, Susan R., Laurie, Cathy C., Mitchell, Braxton D., Vasan, Ramachandran S., Rich, Stephen S., Rotter, Jerome I., Wilson, James G., Boerwinkle, Eric, Psaty, Bruce M., Cupples, L. Adrienne
Publicado no Nat Genet (2017)