Investigating the effect of paralogs on microarray gene-set analysis

por Seoighe Cathal, Faure Andre J, Mulder Nicola J
Publicado 2011-01-01

Investigating the effect of paralogs on microarray gene-set analysis

por Faure, Andre J, Seoighe, Cathal, Mulder, Nicola J
Publicado 2011

DiMSum: an error model and pipeline for analyzing deep mutational scanning data and diagnosing common experimental pathologies

por Faure, Andre J., Schmiedel, Jörn M., Baeza-Centurion, Pablo, Lehner, Ben
Publicado en Genome Biol (2020)

The genetic landscape for amyloid beta fibril nucleation accurately discriminates familial Alzheimer’s disease mutations

por Seuma, Mireia, Faure, Andre J, Badia, Marta, Lehner, Ben, Bolognesi, Benedetta
Publicado en eLife (2021)

Fitness landscape of a dynamic RNA structure

por Soo, Valerie W. C., Swadling, Jacob B., Faure, Andre J., Warnecke, Tobias
Publicado en PLoS Genet (2021)

The mutational landscape of a prion-like domain

por Bolognesi, Benedetta, Faure, Andre J., Seuma, Mireia, Schmiedel, Jörn M., Tartaglia, Gian Gaetano, Lehner, Ben
Publicado en Nat Commun (2019)

Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes

por Schwalie, Petra C, Ward, Michelle C, Cain, Carolyn E, Faure, Andre J, Gilad, Yoav, Odom, Duncan T, Flicek, Paul
Publicado 2013

Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules

por Faure, Andre J., Schmidt, Dominic, Watt, Stephen, Schwalie, Petra C., Wilson, Michael D., Xu, Huiling, Ramsay, Robert G., Odom, Duncan T., Flicek, Paul
Publicado 2012

Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin

por Ing-Simmons, Elizabeth, Seitan, Vlad C., Faure, Andre J., Flicek, Paul, Carroll, Thomas, Dekker, Job, Fisher, Amanda G., Lenhard, Boris, Merkenschlager, Matthias
Publicado en Genome Res (2015)

Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments

por Seitan, Vlad C., Faure, Andre J., Zhan, Ye, McCord, Rachel Patton, Lajoie, Bryan R., Ing-Simmons, Elizabeth, Lenhard, Boris, Giorgetti, Luca, Heard, Edith, Fisher, Amanda G., Flicek, Paul, Dekker, Job, Merkenschlager, Matthias
Publicado 2013

Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways

por Ballester, Benoit, Medina-Rivera, Alejandra, Schmidt, Dominic, Gonzàlez-Porta, Mar, Carlucci, Matthew, Chen, Xiaoting, Chessman, Kyle, Faure, Andre J, Funnell, Alister PW, Goncalves, Angela, Kutter, Claudia, Lukk, Margus, Menon, Suraj, McLaren, William M, Stefflova, Klara, Watt, Stephen, Weirauch, Matthew T, Crossley, Merlin, Marioni, John C, Odom, Duncan T, Flicek, Paul, Wilson, Michael D
Publicado en eLife (2014)

3D structure of individual mammalian genomes studied by single cell Hi-C

por Stevens, Tim J., Lando, David, Basu, Srinjan, Atkinson, Liam P., Cao, Yang, Lee, Steven F., Leeb, Martin, Wohlfahrt, Kai J., Boucher, Wayne, O’Shaughnessy-Kirwan, Aoife, Cramard, Julie, Faure, Andre J., Ralser, Meryem, Blanco, Enrique, Morey, Lluis, Sansó, Miriam, Palayret, Matthieu G. S., Lehner, Ben, Di Croce, Luciano, Wutz, Anton, Hendrich, Brian, Klenerman, Dave, Laue, Ernest D.
Publicado en Nature (2017)