Transposable element detection from whole genome sequence data

Por Ewing, Adam D.
Publicado no Mob DNA (2015)

High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes

Por Ewing, Adam D., Kazazian, Haig H.
Publicado em 2010

Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humans

Por Ewing, Adam D., Kazazian, Haig H.
Publicado em 2011

Enrichment of processed pseudogene transcripts in L1-ribonucleoprotein particles

Por Mandal, Prabhat K., Ewing, Adam D., Hancks, Dustin C., Kazazian, Haig H.
Publicado em 2013

Exon-trapping mediated by the human retrotransposon SVA

Por Hancks, Dustin C., Ewing, Adam D., Chen, Jesse E., Tokunaga, Katsushi, Kazazian, Haig H.
Publicado em 2009

Pathogenic orphan transduction created by a non-reference LINE-1 retrotransposon

Por Solyom, Szilvia, Ewing, Adam D., Hancks, Dustin C., Takeshima, Yasuhiro, Awano, Hiroyuki, Matsuo, Masafumi, Kazazian, Haig. H.
Publicado em 2011

Pathogenic Orphan Transduction Created by a Non-reference LINE-1 Retrotransposon

Por Ewing, Adam D., Hancks, Dustin C., Takeshima, Yasuhiro, Awano, Hiroyuki, Matsuo, Masafumi, Kazazian, Haig. H., Solyom, Szilvia
Publicado em 2012

Retrotransposition of gene transcripts leads to structural variation in mammalian genomes

Por Ewing, Adam D, Ballinger, Tracy J, Earl, Dent, Harris, Christopher C, Ding, Li, Wilson, Richard K, Haussler, David
Publicado em 2013

An evolutionary arms race between KRAB zinc finger genes 91/93 and SVA/L1 retrotransposons

Por Jacobs, Frank MJ, Greenberg, David, Nguyen, Ngan, Haeussler, Maximilian, Ewing, Adam D, Katzman, Sol, Paten, Benedict, Salama, Sofie R, Haussler, David
Publicado no Nature (2014)

Ubiquitous L1 Mosaicism in Hippocampal Neurons

Por Upton, Kyle R., Gerhardt, Daniel J., Jesuadian, J. Samuel, Richardson, Sandra R., Sánchez-Luque, Francisco J., Bodea, Gabriela O., Ewing, Adam D., Salvador-Palomeque, Carmen, van der Knaap, Marjo S., Brennan, Paul M., Vanderver, Adeline, Faulkner, Geoffrey J.
Publicado no Cell (2015)

Evidence for L1-associated DNA rearrangements and negligible L1 retrotransposition in glioblastoma multiforme

Por Carreira, Patricia E., Ewing, Adam D., Li, Guibo, Schauer, Stephanie N., Upton, Kyle R., Fagg, Allister C., Morell, Santiago, Kindlova, Michaela, Gerdes, Patricia, Richardson, Sandra R., Li, Bo, Gerhardt, Daniel J., Wang, Jun, Brennan, Paul M., Faulkner, Geoffrey J.
Publicado no Mob DNA (2016)

Extensive somatic L1 retrotransposition in colorectal tumors

Por Solyom, Szilvia, Ewing, Adam D., Rahrmann, Eric P., Doucet, Tara, Nelson, Heather H., Burns, Michael B., Harris, Reuben S., Sigmon, David F., Casella, Alex, Erlanger, Bracha, Wheelan, Sarah, Upton, Kyle R., Shukla, Ruchi, Faulkner, Geoffrey J., Largaespada, David A., Kazazian, Haig H.
Publicado em 2012

Global optimization of somatic variant identification in cancer genomes with a global community challenge

Por Boutros, Paul C, Ewing, Adam D, Ellrott, Kyle, Norman, Thea C, Dang, Kristen K, Hu, Yin, Kellen, Michael R, Suver, Christine, Bare, J Christopher, Stein, Lincoln D, Spellman, Paul T, Stolovitzky, Gustavo, Friend, Stephen H, Margolin, Adam A, Stuart, Joshua M
Publicado em 2014

Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection

Por Ewing, Adam D, Houlahan, Kathleen E, Hu, Yin, Ellrott, Kyle, Caloian, Cristian, Yamaguchi, Takafumi N, Bare, J Christopher, P’ng, Christine, Waggott, Daryl, Sabelnykova, Veronica Y, Kellen, Michael R, Norman, Thea C, Haussler, David, Friend, Stephen H, Stolovitzky, Gustavo, Margolin, Adam A, Stuart, Joshua M, Boutros, Paul C
Publicado no Nat Methods (2015)

Widespread somatic L1 retrotransposition occurs early during gastrointestinal cancer evolution

Por Ewing, Adam D., Gacita, Anthony, Wood, Laura D., Ma, Florence, Xing, Dongmei, Kim, Min-Sik, Manda, Srikanth S., Abril, Gabriela, Pereira, Gavin, Makohon-Moore, Alvin, Looijenga, Leendert H.J., Gillis, Ad J.M., Hruban, Ralph H., Anders, Robert A., Romans, Katharine E., Pandey, Akhilesh, Iacobuzio-Donahue, Christine A., Vogelstein, Bert, Kinzler, Kenneth W., Kazazian, Haig H., Solyom, Szilvia
Publicado no Genome Res (2015)