In vitro evolution of distinct self-cleaving ribozymes in diverse environments

af Popović, Milena, Fliss, Palmer S., Ditzler, Mark A.
Udgivet i Nucleic Acids Res (2015)

Molecular dynamics suggest multifunctionality of an adenine imino group in acid-base catalysis of the hairpin ribozyme

af Ditzler, Mark A., Šponer, Jiří, Walter, Nils G.
Udgivet 2009

Molecular Dynamics and Quantum Mechanics of RNA: Conformational and Chemical Change We Can Believe In

af Ditzler, Mark A., Otyepka, Michal, Šponer, Jiřì, Walter, Nils G.
Udgivet 2009

Evolution of ribozymes in the presence of a mineral surface

af Stephenson, James D., Popović, Milena, Bristow, Thomas F., Ditzler, Mark A.
Udgivet i RNA (2016)

A rugged free energy landscape separates multiple functional RNA folds throughout denaturation

af Ditzler, Mark A., Rueda, David, Mo, Jingjie, Håkansson, Kristina, Walter, Nils G.
Udgivet 2008

Big on Change, Small on Innovation: Evolutionary Consequences of RNA Sequence Duplication

af Plebanek, Andrew, Larnerd, Caleb, Popović, Milena, Wei, Chenyu, Pohorille, Andrew, Ditzler, Mark A.
Udgivet i J Mol Evol (2019)

In vitro selections with RNAs of variable length converge on a robust catalytic core

af Popović, Milena, Ellingson, Alexander Q, Chu, Theresa P, Wei, Chenyu, Pohorille, Andrew, Ditzler, Mark A
Udgivet i Nucleic Acids Res (2020)

Broad-spectrum aptamer inhibitors of HIV reverse transcriptase closely mimic natural substrates

af Ditzler, Mark A., Bose, Debojit, Shkriabai, Nikolozi, Marchand, Bruno, Sarafianos, Stefan G., Kvaratskhelia, Mamuka, Burke, Donald H.
Udgivet 2011

Selection of 2′-Deoxy-2′-Fluoroarabino Nucleic Acid (FANA) Aptamers That Bind HIV-1 Integrase with Picomolar Affinity

af Rose, Kevin M., Alves Ferreira-Bravo, Irani, Li, Min, Craigie, Robert, Ditzler, Mark A., Holliger, Philipp, DeStefano, Jeffrey J.
Udgivet i ACS Chem Biol (2019)

Potent Inhibition of HIV-1 Reverse Transcriptase and Replication by Nonpseudoknot, “UCAA-motif” RNA Aptamers

af Whatley, Angela S, Ditzler, Mark A, Lange, Margaret J, Biondi, Elisa, Sawyer, Andrew W, Chang, Jonathan L, Franken, Joshua D, Burke, Donald H
Udgivet 2013

High-throughput sequence analysis reveals structural diversity and improved potency among RNA inhibitors of HIV reverse transcriptase

af Ditzler, Mark A., Lange, Margaret J., Bose, Debojit, Bottoms, Christopher A., Virkler, Katherine F., Sawyer, Andrew W., Whatley, Angela S., Spollen, William, Givan, Scott A., Burke, Donald H.
Udgivet 2013

Conformational dynamics of single pre–mRNA molecules during in vitro splicing

af Abelson, John, Blanco, Mario, Ditzler, Mark A., Fuller, Franklin, Aravamudhan, Pavithra, Wood, Mona, Villa, Tommaso, Ryan, Daniel E., Pleiss, Jeffrey A., Maeder, Corina, Guthrie, Christine, Walter, Nils G.
Udgivet 2010