Computational studies of rna and dna

od Šponer, Jiří, Lankaš, Filip
Wydane 2006

Molecular dynamics simulations of sarcin–ricin rRNA motif

od Špačková, Nad'a, Šponer, Jiří
Wydane 2006

Molecular dynamics simulations and their application to four-stranded DNA

od Šponer, Jiří, Špačková, Nad’a
Wydane 2007

Elbow Flexibility of the kt38 RNA Kink-Turn Motif Investigated by Free-Energy Molecular Dynamics Simulations

od Curuksu, Jeremy, Sponer, Jiri, Zacharias, Martin
Wydane 2009

Structure and mechanical properties of the ribosomal L1 stalk three-way junction

od Réblová, Kamila, Šponer, Jiří, Lankaš, Filip
Wydane 2012

Explaining the varied glycosidic conformational, G-tract length and sequence preferences for anti-parallel G-quadruplexes

od Cang, Xiaohui, Šponer, Jiří, Cheatham, Thomas E.
Wydane 2011

Molecular dynamics simulations of G-DNA and perspectives on the simulation of nucleic acid structures

od šponer, Jiří, Cang, Xiaohui, Cheatham, Thomas E.
Wydane 2012

Elastic properties of ribosomal RNA building blocks: molecular dynamics of the GTPase-associated center rRNA

od Rázga, Filip, Koča, Jaroslav, Mokdad, Ali, Šponer, Jiří
Wydane 2007

Molecular dynamics suggest multifunctionality of an adenine imino group in acid-base catalysis of the hairpin ribozyme

od Ditzler, Mark A., Šponer, Jiří, Walter, Nils G.
Wydane 2009

Insight into G-DNA Structural Polymorphism and Folding from Sequence and Loop Connectivity through Free Energy Analysis

od Cang, Xiaohui, Šponer, Jiří, Cheatham, III, Thomas E.
Wydane 2011

Hinge-Like Motions in RNA Kink-Turns: The Role of the Second A-Minor Motif and Nominally Unpaired Bases

od Rázga, Filip, Koča, Jaroslav, Šponer, Jiří, Leontis, Neocles B.
Wydane 2005

DNA Basepair Step Deformability Inferred from Molecular Dynamics Simulations

od Lankaš, Filip, Šponer, Jiří, Langowski, Jörg, Cheatham, Thomas E.
Wydane 2003

Protonation states of the key active site residues and structural dynamics of glmS riboswitch as reveled by molecular dynamics

od Banáš, Pavel, Walter, Nils G., Šponer, Jiří, Otyepka, Michal
Wydane 2010

Molecular dynamics simulations suggest that RNA three-way junctions can act as flexible RNA structural elements in the ribosome

od Beššeová, Ivana, Réblová, Kamila, Leontis, Neocles B., Šponer, Jiří
Wydane 2010

MD simulations reveal the basis for dynamic assembly of Hfq–RNA complexes

od Krepl, Miroslav, Dendooven, Tom, Luisi, Ben F., Sponer, Jiri
Wydane w J Biol Chem (2021)

Structural and evolutionary classification of G/U wobble basepairs in the ribosome

od Mokdad, Ali, Krasovska, Maryna V., Sponer, Jiri, Leontis, Neocles B.
Wydane 2006

Trapped water molecules are essential to structural dynamics and function of a ribozyme

od Rhodes, Maria M., Réblová, Kamila, Šponer, Jiří, Walter, Nils G.
Wydane 2006

The genomic HDV ribozyme utilizes a previously unnoticed U-turn motif to accomplish fast site-specific catalysis

od Sefcikova, Jana, Krasovska, Maryna V., Šponer, Jiří, Walter, Nils G.
Wydane 2007

Molecular Dynamics and Quantum Mechanics of RNA: Conformational and Chemical Change We Can Believe In

od Ditzler, Mark A., Otyepka, Michal, Šponer, Jiřì, Walter, Nils G.
Wydane 2009

On the Use of Molecular Dynamics Simulations for Probing Allostery through DNA

od Dršata, Tomáš, Zgarbová, Marie, Jurečka, Petr, Šponer, Jiří, Lankaš, Filip
Wydane w Biophys J (2016)