Molecular dynamics simulations of sarcin–ricin rRNA motif

著者: Špačková, Nad'a, Šponer, Jiří
出版事項 2006

Molecular dynamics simulations and their application to four-stranded DNA

著者: Šponer, Jiří, Špačková, Nad’a
出版事項 2007

Molecular Dynamics Simulations of RNA: An In Silico Single Molecule Approach

著者: McDowell, S. Elizabeth, Špačková, Nad'a, Šponer, Jiří, Walter, Nils G.
出版事項 2007

Molecular dynamics simulations of RNA kissing–loop motifs reveal structural dynamics and formation of cation-binding pockets

著者: Réblová, Kamila, Špačková, Nad'a, Šponer, Judit E., Koča, Jaroslav, Šponer, Jiří
出版事項 2003

Long-Residency Hydration, Cation Binding, and Dynamics of Loop E/Helix IV rRNA-L25 Protein Complex

著者: Réblová, Kamila, Špačková, Nad'a, Koča, Jaroslav, Leontis, Neocles B., Šponer, Jiří
出版事項 2004

Local conformational variations observed in B-DNA crystals do not improve base stacking: computational analysis of base stacking in a d(CATGGGCCCATG)(2) B↔A intermediate crystal st...

著者: Šponer, Jirí, Florián, Jan, Ng, Ho-Leung, Šponer, Judit E., Špacková, Nad’a
出版事項 2000

Critical effect of the N2 amino group on structure, dynamics, and elasticity of DNA polypurine tracts.

著者: Lankas, Filip, Cheatham, Thomas E, Spacková, Nad'a, Hobza, Pavel, Langowski, Jörg, Sponer, Jirí
出版事項 2002

Molecular Dynamics Simulations of Guanine Quadruplex Loops: Advances and Force Field Limitations

著者: Fadrná, Eva, Špačková, Nad'a, Štefl, Richard, Koča, Jaroslav, Cheatham, Thomas E., Šponer, Jiří
出版事項 2004

Relative stability of different DNA guanine quadruplex stem topologies derived using large-scale quantum-chemical computations

著者: Šponer, Jiří, Mládek, Arnošt, Špačková, Nad’a, Cang, Xiaohui, Cheatham, Thomas E., Grimme, Stefan
出版事項 2013

Non-Watson-Crick Basepairing and Hydration in RNA Motifs: Molecular Dynamics of 5S rRNA Loop E

著者: Réblová, Kamila, Špačková, Nad'a, Štefl, Richard, Csaszar, Kristina, Koča, Jaroslav, Leontis, Neocles B., Šponer, Jiří
出版事項 2003

Formation Pathways of a Guanine-Quadruplex DNA Revealed by Molecular Dynamics and Thermodynamic Analysis of the Substates

著者: Štefl, Richard, Cheatham, Thomas E., Špačková, Nad'a, Fadrná, Eva, Berger, Imre, Koča, Jaroslav, Šponer, Jiří
出版事項 2003