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Molecular dynamics simulations of RNA kissing–loop motifs reveal structural dynamics and formation of cation-binding pockets

Explicit solvent molecular dynamics (MD) simulations were carried out for three RNA kissing–loop complexes. The theoretical structure of two base pairs (2 bp) complex of H3 stem–loop of Moloney murine leukemia virus agrees with the NMR structure with modest violations of few NMR restraints comparabl...

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Detalhes bibliográficos
Main Authors: Réblová, Kamila, Špačková, Nad'a, Šponer, Judit E., Koča, Jaroslav, Šponer, Jiří
Formato: Artigo
Idioma:Inglês
Publicado em: Oxford University Press 2003
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Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC290250/
https://ncbi.nlm.nih.gov/pubmed/14627827
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/nar/gkg880
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