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Molecular dynamics simulations of RNA kissing–loop motifs reveal structural dynamics and formation of cation-binding pockets

Explicit solvent molecular dynamics (MD) simulations were carried out for three RNA kissing–loop complexes. The theoretical structure of two base pairs (2 bp) complex of H3 stem–loop of Moloney murine leukemia virus agrees with the NMR structure with modest violations of few NMR restraints comparabl...

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Bibliografiske detaljer
Main Authors: Réblová, Kamila, Špačková, Nad'a, Šponer, Judit E., Koča, Jaroslav, Šponer, Jiří
Format: Artigo
Sprog:Inglês
Udgivet: Oxford University Press 2003
Fag:
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC290250/
https://ncbi.nlm.nih.gov/pubmed/14627827
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/nar/gkg880
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