The future of deciphering personal genomes? The flies (and yeast and worms) still have it

Por Rosebrock, Adam P, Caudy, Amy A
Publicado em 2012

Stable suppression of gene expression by RNAi in mammalian cells

Por Paddison, Patrick J., Caudy, Amy A., Hannon, Gregory J.
Publicado em 2002

Fragile X-related protein and VIG associate with the RNA interference machinery

Por Caudy, Amy A., Myers, Mike, Hannon, Gregory J., Hammond, Scott M.
Publicado em 2002

Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays

Por Bloom, Joshua S, Khan, Zia, Kruglyak, Leonid, Singh, Mona, Caudy, Amy A
Publicado em 2009

Comparative gene expression between two yeast species

Por Guan, Yuanfang, Dunham, Maitreya J, Troyanskaya, Olga G, Caudy, Amy A
Publicado em 2013

Element 1360 and RNAi Components Contribute to HP1-Dependent Silencing of a Pericentric Reporter

Por Haynes, Karmella A., Caudy, Amy A., Collins, Lynne, Elgin, Sarah C.R.
Publicado em 2006

Short hairpin RNAs (shRNAs) induce sequence-specific silencing in mammalian cells

Por Paddison, Patrick J., Caudy, Amy A., Bernstein, Emily, Hannon, Gregory J., Conklin, Douglas S.
Publicado em 2002

Yeast metabolic and signaling genes are required for heat-shock survival and have little overlap with the heat-induced genes

Por Gibney, Patrick A., Lu, Charles, Caudy, Amy A., Hess, David C., Botstein, David
Publicado em 2013

Predicting gene function in a hierarchical context with an ensemble of classifiers

Por Guan, Yuanfang, Myers, Chad L, Hess, David C, Barutcuoglu, Zafer, Caudy, Amy A, Troyanskaya, Olga G
Publicado em 2008

Metabolomic analysis via reversed-phase ion-pairing liquid chromatography coupled to a stand alone orbitrap mass spectrometer

Por Lu, Wenyun, Clasquin, Michelle F., Melamud, Eugene, Amador-Noguez, Daniel, Caudy, Amy A., Rabinowitz, Joshua D.
Publicado em 2010

Quantitative measurement of allele-specific protein expression in a diploid yeast hybrid by LC-MS

Por Khan, Zia, Bloom, Joshua S, Amini, Sasan, Singh, Mona, Perlman, David H, Caudy, Amy A, Kruglyak, Leonid
Publicado em 2012

The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction

Por Huttenhower, Curtis, Hibbs, Matthew A., Myers, Chad L., Caudy, Amy A., Hess, David C., Troyanskaya, Olga G.
Publicado em 2009

Directing Experimental Biology: A Case Study in Mitochondrial Biogenesis

Por Hibbs, Matthew A., Myers, Chad L., Huttenhower, Curtis, Hess, David C., Li, Kai, Caudy, Amy A., Troyanskaya, Olga G.
Publicado em 2009

Accurate proteome-wide protein quantification from high-resolution (15)N mass spectra

Por Khan, Zia, Amini, Sasan, Bloom, Joshua S, Ruse, Cristian, Caudy, Amy A, Kruglyak, Leonid, Singh, Mona, Perlman, David H, Tavazoie, Saeed
Publicado em 2011

Dissection of genetically complex traits with extremely large pools of yeast segregants

Por Ehrenreich, Ian M., Torabi, Noorossadat, Jia, Yue, Kent, Jonathan, Martis, Stephen, Shapiro, Joshua A., Gresham, David, Caudy, Amy A., Kruglyak, Leonid
Publicado em 2010

Interspecies Systems Biology Uncovers Metabolites Affecting C. elegans Gene Expression and Life History Traits

Por Watson, Emma, MacNeil, Lesley T., Ritter, Ashlyn D., Yilmaz, L. Safak, Rosebrock, Adam P., Caudy, Amy A., Walhout, Albertha J. M.
Publicado em 2014

Mitochondrial control through nutritionally regulated global histone H3 lysine-4 demethylation

Por Soloveychik, Maria, Xu, Mengshu, Zaslaver, Olga, Lee, Kwanyin, Narula, Ashrut, Jiang, River, Rosebrock, Adam P., Caudy, Amy A., Meneghini, Marc D.
Publicado no Sci Rep (2016)

Predicting Cellular Growth from Gene Expression Signatures

Por Airoldi, Edoardo M., Huttenhower, Curtis, Gresham, David, Lu, Charles, Caudy, Amy A., Dunham, Maitreya J., Broach, James R., Botstein, David, Troyanskaya, Olga G.
Publicado em 2009

Nucleotide degradation and ribose salvage in yeast

Por Xu, Yi-Fan, Létisse, Fabien, Absalan, Farnaz, Lu, Wenyun, Kuznetsova, Ekaterina, Brown, Greg, Caudy, Amy A, Yakunin, Alexander F, Broach, James R, Rabinowitz, Joshua D
Publicado em 2013

Heritability and genetic basis of protein level variation in an outbred population

Por Parts, Leopold, Liu, Yi-Chun, Tekkedil, Manu M., Steinmetz, Lars M., Caudy, Amy A., Fraser, Andrew G., Boone, Charles, Andrews, Brenda J., Rosebrock, Adam P.
Publicado em 2014