Intra-tracheal Administration of Haemophilus influenzae in Mouse Models to Study Airway Inflammation

Por Venuprasad, K., Theivanthiran, Balamayooran, Cantarel, Brandi
Publicado no J Vis Exp (2016)

Complex Carbohydrate Utilization by the Healthy Human Microbiome

Por Cantarel, Brandi L., Lombard, Vincent, Henrissat, Bernard
Publicado em 2012

Sparse distance-based learning for simultaneous multiclass classification and feature selection of metagenomic data

Por Liu, Zhenqiu, Hsiao, William, Cantarel, Brandi L., Drábek, Elliott Franco, Fraser-Liggett, Claire
Publicado em 2011

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

Por Cantarel, Brandi L., Coutinho, Pedro M., Rancurel, Corinne, Bernard, Thomas, Lombard, Vincent, Henrissat, Bernard
Publicado em 2009

BAYSIC: a Bayesian method for combining sets of genome variants with improved specificity and sensitivity

Por Cantarel, Brandi L, Weaver, Daniel, McNeill, Nathan, Zhang, Jianhua, Mackey, Aaron J, Reese, Justin
Publicado em 2014

Gene-targeted metagenomic analysis of glucan-branching enzyme gene profiles among human and animal fecal microbiota

Por Lee, Sunghee, Cantarel, Brandi, Henrissat, Bernard, Gevers, Dirk, Birren, Bruce W, Huttenhower, Curtis, Ko, GwangPyo
Publicado em 2014

Functionally pathogenic EARS2 variants in vitro may not manifest a phenotype in vivo

Por McNeill, Nathan, Nasca, Alessia, Reyes, Aurelio, Lemoine, Benjamin, Cantarel, Brandi, Vanderver, Adeline, Schiffmann, Raphael, Ghezzi, Daniele
Publicado no Neurol Genet (2017)

The convergence of carbohydrate active gene repertoires in human gut microbes

Por Lozupone, Catherine A., Hamady, Micah, Cantarel, Brandi L., Coutinho, Pedro M., Henrissat, Bernard, Gordon, Jeffrey I., Knight, Rob
Publicado em 2008

Analysis of archived residual newborn screening blood spots after whole genome amplification

Por Cantarel, Brandi L., Lei, Yunping, Weaver, Daniel, Zhu, Huiping, Farrell, Andrew, Benstead-Hume, Graeme, Reese, Justin, Finnell, Richard H.
Publicado no BMC Genomics (2015)

MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes

Por Cantarel, Brandi L., Korf, Ian, Robb, Sofia M.C., Parra, Genis, Ross, Eric, Moore, Barry, Holt, Carson, Sánchez Alvarado, Alejandro, Yandell, Mark
Publicado em 2008

Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations

Por Looft, Torey, Allen, Heather K, Cantarel, Brandi L, Levine, Uri Y, Bayles, Darrell O, Alt, David P, Henrissat, Bernard, Stanton, Thaddeus B
Publicado no ISME J (2014)

Gut microbiota in MS: possible influence of immunomodulators

Por Cantarel, Brandi L., Waubant, Emmanuelle, Chehoud, Christel, Kuczynski, Justin, DeSantis, Todd Z., Warrington, Janet, Venkatesan, Arun, Fraser, Claire M., Mowry, Ellen M.
Publicado no J Investig Med (2015)

Metaproteomics reveals persistent and phylum-redundant metabolic functional stability in adult human gut microbiomes of Crohn’s remission patients despite temporal variations in mi...

Por Blakeley-Ruiz, J. Alfredo, Erickson, Alison R., Cantarel, Brandi L., Xiong, Weili, Adams, Rachel, Jansson, Janet K., Fraser, Claire M., Hettich, Robert L.
Publicado no Microbiome (2019)

Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes

Por Tasse, Lena, Bercovici, Juliette, Pizzut-Serin, Sandra, Robe, Patrick, Tap, Julien, Klopp, Christophe, Cantarel, Brandi L., Coutinho, Pedro M., Henrissat, Bernard, Leclerc, Marion, Doré, Joël, Monsan, Pierre, Remaud-Simeon, Magali, Potocki-Veronese, Gabrielle
Publicado em 2010

Strategies for Metagenomic-Guided Whole-Community Proteomics of Complex Microbial Environments

Por Cantarel, Brandi L., Erickson, Alison R., VerBerkmoes, Nathan C., Erickson, Brian K., Carey, Patricia A., Pan, Chongle, Shah, Manesh, Mongodin, Emmanuel F., Jansson, Janet K., Fraser-Liggett, Claire M., Hettich, Robert L.
Publicado em 2011

Whole-Genome Sequencing Accurately Identifies Resistance to Extended-Spectrum β-Lactams for Major Gram-Negative Bacterial Pathogens

Por Shelburne, Samuel A, Kim, Jiwoong, Munita, Jose M, Sahasrabhojane, Pranoti, Shields, Ryan K, Press, Ellen G, Li, Xiqi, Arias, Cesar A, Cantarel, Brandi, Jiang, Ying, Kim, Min S, Aitken, Samuel L, Greenberg, David E
Publicado no Clin Infect Dis (2017)

Integrated Metagenomics/Metaproteomics Reveals Human Host-Microbiota Signatures of Crohn's Disease

Por Erickson, Alison R., Cantarel, Brandi L., Lamendella, Regina, Darzi, Youssef, Mongodin, Emmanuel F., Pan, Chongle, Shah, Manesh, Halfvarson, Jonas, Tysk, Curt, Henrissat, Bernard, Raes, Jeroen, Verberkmoes, Nathan C., Fraser, Claire M., Hettich, Robert L., Jansson, Janet K.
Publicado em 2012

GEAMP, a Novel Gastroesophageal Junction Carcinoma Cell Line Derived from a Malignant Pleural Effusion

Por Zhang, Wei, Williams, Taylor A., Bhagwath, Ankur S., Hiermann, Jared S., Peacock, Craig D., Watkins, D. Neil, Ding, Peiguo, Park, Jason Y., Montgomery, Elizabeth A., Forastiere, Arlene A., Jie, Chunfa, Cantarel, Brandi L., Pham, Thai H., Wang, David H.
Publicado no Lab Invest (2019)

Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome

Por Abubucker, Sahar, Segata, Nicola, Goll, Johannes, Schubert, Alyxandria M., Izard, Jacques, Cantarel, Brandi L., Rodriguez-Mueller, Beltran, Zucker, Jeremy, Thiagarajan, Mathangi, Henrissat, Bernard, White, Owen, Kelley, Scott T., Methé, Barbara, Schloss, Patrick D., Gevers, Dirk, Mitreva, Makedonka, Huttenhower, Curtis
Publicado em 2012

Mitochondrial dysfunction during loss of prohibitin 1 triggers Paneth cell defects and ileitis

Por Jackson, Dakota N, Panopoulos, Marina, Neumann, William L, Turner, Kevin, Cantarel, Brandi L, Thompson-Snipes, LuAnn, Dassopoulos, Themistocles, Feagins, Linda A, Souza, Rhonda F, Mills, Jason C, Blumberg, Richard S, Venuprasad, K, Thompson, Winston E, Theiss, Arianne L
Publicado no Gut (2020)