Transcription of the Rod-Shaped Viruses SIRV1 and SIRV2 of the Hyperthermophilic Archaeon Sulfolobus

بواسطة Kessler, Alexandra, Brinkman, Arie B., van der Oost, John, Prangishvili, David
منشور في 2004

The archaeal TFIIEα homologue facilitates transcription initiation by enhancing TATA-box recognition

بواسطة Bell, Stephen D., Brinkman, Arie B., Oost, John van der, Jackson, Stephen P.
منشور في 2001

Dynamic binding of RBPJ is determined by Notch signaling status

بواسطة Castel, David, Mourikis, Philippos, Bartels, Stefanie J.J., Brinkman, Arie B., Tajbakhsh, Shahragim, Stunnenberg, Hendrik G.
منشور في 2013

Dynamic binding of RBPJ is determined by Notch signaling status

بواسطة Castel, David, Mourikis, Philippos, Bartels, Stefanie J.J., Brinkman, Arie B., Tajbakhsh, Shahragim, Stunnenberg, Hendrik G.
منشور في 2013

DNA methylation immediately adjacent to active histone marking does not silence transcription

بواسطة Brinkman, Arie B., Pennings, Sebastiaan W. C., Braliou, Georgia G., Rietveld, Luc E. G., Stunnenberg, Hendrik G.
منشور في 2007

Histone modification patterns associated with the human X chromosome

بواسطة Brinkman, Arie B, Roelofsen, Thijs, Pennings, Sebastiaan W C, Martens, Joost H A, Jenuwein, Thomas, Stunnenberg, Hendrik G
منشور في 2006

MBD2/NuRD and MBD3/NuRD, Two Distinct Complexes with Different Biochemical and Functional Properties

بواسطة Le Guezennec, Xavier, Vermeulen, Michiel, Brinkman, Arie B., Hoeijmakers, Wieteke A. M., Cohen, Adrian, Lasonder, Edwin, Stunnenberg, Hendrik G.
منشور في 2006

A SILAC-Based Screen for Methyl-CpG Binding Proteins Identifies RBP-J as a DNA Methylation and Sequence-Specific Binding Protein

بواسطة Bartels, Stefanie J. J., Spruijt, Cornelia G., Brinkman, Arie B., Jansen, Pascal W. T. C., Vermeulen, Michiel, Stunnenberg, Hendrik G.
منشور في 2011

Structural insight into gene transcriptional regulation and effector binding by the Lrp/AsnC family

بواسطة Thaw, Paul, Sedelnikova, Svetlana E., Muranova, Tatyana, Wiese, Sebastian, Ayora, Sylvia, Alonso, Juan C., Brinkman, Arie B., Akerboom, Jasper, van der Oost, John, Rafferty, John B.
منشور في 2006

Structural insight into gene transcriptional regulation and effector binding by the Lrp/AsnC family

بواسطة Thaw, Paul, Sedelnikova, Svetlana E., Muranova, Tatyana, Wiese, Sebastian, Ayora, Sylvia, Alonso, Juan C., Brinkman, Arie B., Akerboom, Jasper, van der Oost, John, Rafferty, John B.
منشور في 2006

Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis

بواسطة Bogdanović, Ozren, Long, Steven W., van Heeringen, Simon J., Brinkman, Arie B., Gómez-Skarmeta, Jose Luis, Stunnenberg, Hendrik G., Jones, Peter L., Veenstra, Gert Jan C.
منشور في 2011

Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk

بواسطة Brinkman, Arie B., Gu, Hongcang, Bartels, Stefanie J.J., Zhang, Yingying, Matarese, Filomena, Simmer, Femke, Marks, Hendrik, Bock, Christoph, Gnirke, Andreas, Meissner, Alexander, Stunnenberg, Hendrik G.
منشور في 2012

Genome-Wide Binding of MBD2 Reveals Strong Preference for Highly Methylated Loci

بواسطة Menafra, Roberta, Brinkman, Arie B., Matarese, Filomena, Franci, Gianluigi, Bartels, Stefanie J. J., Nguyen, Luan, Shimbo, Takashi, Wade, Paul A., Hubner, Nina C., Stunnenberg, Hendrik G.
منشور في 2014

Crystal structure of the Lrp-like transcriptional regulator from the archaeon Pyrococcus furiosus

بواسطة Leonard, Philip M., Smits, Sander H.J., Sedelnikova, Svetlana E., Brinkman, Arie B., de Vos, Willem M., van der Oost, John, Rice, David W., Rafferty, John B.
منشور في 2001

Comparative genome-wide DNA methylation analysis of colorectal tumor and matched normal tissues

بواسطة Simmer, Femke, Brinkman, Arie B., Assenov, Yassen, Matarese, Filomena, Kaan, Anita, Sabatino, Lina, Villanueva, Alberto, Huertas, Dori, Esteller, Manel, Lengauer, Thomas, Bock, Christoph, Colantuoni, Vittorio, Altucci, Lucia, Stunnenberg, Hendrik G.
منشور في 2012

Comprehensive evaluation of methods to assess overall and cell-specific immune infiltrates in breast cancer

بواسطة Nederlof, Iris, De Bortoli, Davide, Bareche, Yacine, Nguyen, Bastien, de Maaker, Michiel, Hooijer, Gerrit K. J., Buisseret, Laurence, Kok, Marleen, Smid, Marcel, Van den Eynden, Gert G. G. M., Brinkman, Arie B., Hudecek, Jan, Koster, Jan, Sotiriou, Christos, Larsimont, Denis, Martens, John W. M., van de Vijver, Marc J., Horlings, Hugo M., Salgado, Roberto, Biganzoli, Elia, Desmedt, Christine
الحاوية / القاعدة Breast Cancer Res (2019)

Partially methylated domains are hypervariable in breast cancer and fuel widespread CpG island hypermethylation

بواسطة Brinkman, Arie B., Nik-Zainal, Serena, Simmer, Femke, Rodríguez-González, F. Germán, Smid, Marcel, Alexandrov, Ludmil B., Butler, Adam, Martin, Sancha, Davies, Helen, Glodzik, Dominik, Zou, Xueqing, Ramakrishna, Manasa, Staaf, Johan, Ringnér, Markus, Sieuwerts, Anieta, Ferrari, Anthony, Morganella, Sandro, Fleischer, Thomas, Kristensen, Vessela, Gut, Marta, van de Vijver, Marc J., Børresen-Dale, Anne-Lise, Richardson, Andrea L., Thomas, Gilles, Gut, Ivo G., Martens, John W. M., Foekens, John A., Stratton, Michael R., Stunnenberg, Hendrik G.
الحاوية / القاعدة Nat Commun (2019)

A somatic-mutational process recurrently duplicates germline susceptibility loci and tissue-specific super-enhancers in breast cancers

بواسطة Glodzik, Dominik, Morganella, Sandro, Davies, Helen, Simpson, Peter T, Li, Yilong, Zou, Xueqing, Diez-Perez, Javier, Staaf, Johan, Alexandrov, Ludmil B, Smid, Marcel, Brinkman, Arie B, Rye, Inga Hansine, Russnes, Hege, Raine, Keiran, Purdie, Colin A, Lakhani, Sunil R, Thompson, Alastair M, Birney, Ewan, Stunnenberg, Hendrik G, van de Vijver, Marc J, Martens, John W M, Børresen-Dale, Anne-Lise, Richardson, Andrea L, Kong, Gu, Viari, Alain, Easton, Douglas, Evan, Gerard, Campbell, Peter J, Stratton, Michael R, Nik-Zainal, Serena
الحاوية / القاعدة Nat Genet (2017)

The topography of mutational processes in breast cancer genomes

بواسطة Morganella, Sandro, Alexandrov, Ludmil B., Glodzik, Dominik, Zou, Xueqing, Davies, Helen, Staaf, Johan, Sieuwerts, Anieta M., Brinkman, Arie B., Martin, Sancha, Ramakrishna, Manasa, Butler, Adam, Kim, Hyung-Yong, Borg, Åke, Sotiriou, Christos, Futreal, P. Andrew, Campbell, Peter J., Span, Paul N., Van Laere, Steven, Lakhani, Sunil R., Eyfjord, Jorunn E., Thompson, Alastair M., Stunnenberg, Hendrik G., van de Vijver, Marc J., Martens, John W. M., Børresen-Dale, Anne-Lise, Richardson, Andrea L., Kong, Gu, Thomas, Gilles, Sale, Julian, Rada, Cristina, Stratton, Michael R., Birney, Ewan, Nik-Zainal, Serena
الحاوية / القاعدة Nat Commun (2016)

Breast cancer genome and transcriptome integration implicates specific mutational signatures with immune cell infiltration

بواسطة Smid, Marcel, Rodríguez-González, F. Germán, Sieuwerts, Anieta M., Salgado, Roberto, Prager-Van der Smissen, Wendy J. C., Vlugt-Daane, Michelle van der, van Galen, Anne, Nik-Zainal, Serena, Staaf, Johan, Brinkman, Arie B., van de Vijver, Marc J., Richardson, Andrea L., Fatima, Aquila, Berentsen, Kim, Butler, Adam, Martin, Sancha, Davies, Helen R., Debets, Reno, Gelder, Marion E. Meijer-Van, van Deurzen, Carolien H. M., MacGrogan, Gaëtan, Van den Eynden, Gert G. G. M., Purdie, Colin, Thompson, Alastair M., Caldas, Carlos, Span, Paul N., Simpson, Peter T., Lakhani, Sunil R., Van Laere, Steven, Desmedt, Christine, Ringnér, Markus, Tommasi, Stefania, Eyford, Jorunn, Broeks, Annegien, Vincent-Salomon, Anne, Futreal, P. Andrew, Knappskog, Stian, King, Tari, Thomas, Gilles, Viari, Alain, Langerød, Anita, Børresen-Dale, Anne-Lise, Birney, Ewan, Stunnenberg, Hendrik G., Stratton, Mike, Foekens, John A., Martens, John W. M.
الحاوية / القاعدة Nat Commun (2016)