Transcription of the Rod-Shaped Viruses SIRV1 and SIRV2 of the Hyperthermophilic Archaeon Sulfolobus

Por Kessler, Alexandra, Brinkman, Arie B., van der Oost, John, Prangishvili, David
Publicado em 2004

The archaeal TFIIEα homologue facilitates transcription initiation by enhancing TATA-box recognition

Por Bell, Stephen D., Brinkman, Arie B., Oost, John van der, Jackson, Stephen P.
Publicado em 2001

Dynamic binding of RBPJ is determined by Notch signaling status

Por Castel, David, Mourikis, Philippos, Bartels, Stefanie J.J., Brinkman, Arie B., Tajbakhsh, Shahragim, Stunnenberg, Hendrik G.
Publicado em 2013

Dynamic binding of RBPJ is determined by Notch signaling status

Por Castel, David, Mourikis, Philippos, Bartels, Stefanie J.J., Brinkman, Arie B., Tajbakhsh, Shahragim, Stunnenberg, Hendrik G.
Publicado em 2013

DNA methylation immediately adjacent to active histone marking does not silence transcription

Por Brinkman, Arie B., Pennings, Sebastiaan W. C., Braliou, Georgia G., Rietveld, Luc E. G., Stunnenberg, Hendrik G.
Publicado em 2007

Histone modification patterns associated with the human X chromosome

Por Brinkman, Arie B, Roelofsen, Thijs, Pennings, Sebastiaan W C, Martens, Joost H A, Jenuwein, Thomas, Stunnenberg, Hendrik G
Publicado em 2006

MBD2/NuRD and MBD3/NuRD, Two Distinct Complexes with Different Biochemical and Functional Properties

Por Le Guezennec, Xavier, Vermeulen, Michiel, Brinkman, Arie B., Hoeijmakers, Wieteke A. M., Cohen, Adrian, Lasonder, Edwin, Stunnenberg, Hendrik G.
Publicado em 2006

A SILAC-Based Screen for Methyl-CpG Binding Proteins Identifies RBP-J as a DNA Methylation and Sequence-Specific Binding Protein

Por Bartels, Stefanie J. J., Spruijt, Cornelia G., Brinkman, Arie B., Jansen, Pascal W. T. C., Vermeulen, Michiel, Stunnenberg, Hendrik G.
Publicado em 2011

Structural insight into gene transcriptional regulation and effector binding by the Lrp/AsnC family

Por Thaw, Paul, Sedelnikova, Svetlana E., Muranova, Tatyana, Wiese, Sebastian, Ayora, Sylvia, Alonso, Juan C., Brinkman, Arie B., Akerboom, Jasper, van der Oost, John, Rafferty, John B.
Publicado em 2006

Structural insight into gene transcriptional regulation and effector binding by the Lrp/AsnC family

Por Thaw, Paul, Sedelnikova, Svetlana E., Muranova, Tatyana, Wiese, Sebastian, Ayora, Sylvia, Alonso, Juan C., Brinkman, Arie B., Akerboom, Jasper, van der Oost, John, Rafferty, John B.
Publicado em 2006

Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis

Por Bogdanović, Ozren, Long, Steven W., van Heeringen, Simon J., Brinkman, Arie B., Gómez-Skarmeta, Jose Luis, Stunnenberg, Hendrik G., Jones, Peter L., Veenstra, Gert Jan C.
Publicado em 2011

Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk

Por Brinkman, Arie B., Gu, Hongcang, Bartels, Stefanie J.J., Zhang, Yingying, Matarese, Filomena, Simmer, Femke, Marks, Hendrik, Bock, Christoph, Gnirke, Andreas, Meissner, Alexander, Stunnenberg, Hendrik G.
Publicado em 2012

Genome-Wide Binding of MBD2 Reveals Strong Preference for Highly Methylated Loci

Por Menafra, Roberta, Brinkman, Arie B., Matarese, Filomena, Franci, Gianluigi, Bartels, Stefanie J. J., Nguyen, Luan, Shimbo, Takashi, Wade, Paul A., Hubner, Nina C., Stunnenberg, Hendrik G.
Publicado em 2014

Crystal structure of the Lrp-like transcriptional regulator from the archaeon Pyrococcus furiosus

Por Leonard, Philip M., Smits, Sander H.J., Sedelnikova, Svetlana E., Brinkman, Arie B., de Vos, Willem M., van der Oost, John, Rice, David W., Rafferty, John B.
Publicado em 2001

Comparative genome-wide DNA methylation analysis of colorectal tumor and matched normal tissues

Por Simmer, Femke, Brinkman, Arie B., Assenov, Yassen, Matarese, Filomena, Kaan, Anita, Sabatino, Lina, Villanueva, Alberto, Huertas, Dori, Esteller, Manel, Lengauer, Thomas, Bock, Christoph, Colantuoni, Vittorio, Altucci, Lucia, Stunnenberg, Hendrik G.
Publicado em 2012

The topography of mutational processes in breast cancer genomes

Por Morganella, Sandro, Alexandrov, Ludmil B., Glodzik, Dominik, Zou, Xueqing, Davies, Helen, Staaf, Johan, Sieuwerts, Anieta M., Brinkman, Arie B., Martin, Sancha, Ramakrishna, Manasa, Butler, Adam, Kim, Hyung-Yong, Borg, Åke, Sotiriou, Christos, Futreal, P. Andrew, Campbell, Peter J., Span, Paul N., Van Laere, Steven, Lakhani, Sunil R., Eyfjord, Jorunn E., Thompson, Alastair M., Stunnenberg, Hendrik G., van de Vijver, Marc J., Martens, John W. M., Børresen-Dale, Anne-Lise, Richardson, Andrea L., Kong, Gu, Thomas, Gilles, Sale, Julian, Rada, Cristina, Stratton, Michael R., Birney, Ewan, Nik-Zainal, Serena
Publicado no Nat Commun (2016)

Breast cancer genome and transcriptome integration implicates specific mutational signatures with immune cell infiltration

Por Smid, Marcel, Rodríguez-González, F. Germán, Sieuwerts, Anieta M., Salgado, Roberto, Prager-Van der Smissen, Wendy J. C., Vlugt-Daane, Michelle van der, van Galen, Anne, Nik-Zainal, Serena, Staaf, Johan, Brinkman, Arie B., van de Vijver, Marc J., Richardson, Andrea L., Fatima, Aquila, Berentsen, Kim, Butler, Adam, Martin, Sancha, Davies, Helen R., Debets, Reno, Gelder, Marion E. Meijer-Van, van Deurzen, Carolien H. M., MacGrogan, Gaëtan, Van den Eynden, Gert G. G. M., Purdie, Colin, Thompson, Alastair M., Caldas, Carlos, Span, Paul N., Simpson, Peter T., Lakhani, Sunil R., Van Laere, Steven, Desmedt, Christine, Ringnér, Markus, Tommasi, Stefania, Eyford, Jorunn, Broeks, Annegien, Vincent-Salomon, Anne, Futreal, P. Andrew, Knappskog, Stian, King, Tari, Thomas, Gilles, Viari, Alain, Langerød, Anita, Børresen-Dale, Anne-Lise, Birney, Ewan, Stunnenberg, Hendrik G., Stratton, Mike, Foekens, John A., Martens, John W. M.
Publicado no Nat Commun (2016)

Landscape of somatic mutations in 560 breast cancer whole genome sequences

Por Nik-Zainal, Serena, Davies, Helen, Staaf, Johan, Ramakrishna, Manasa, Glodzik, Dominik, Zou, Xueqing, Martincorena, Inigo, Alexandrov, Ludmil B., Martin, Sancha, Wedge, David C., Van Loo, Peter, Ju, Young Seok, Smid, Marcel, Brinkman, Arie B, Morganella, Sandro, Aure, Miriam R., Lingjærde, Ole Christian, Langerød, Anita, Ringnér, Markus, Ahn, Sung-Min, Boyault, Sandrine, Brock, Jane E., Broeks, Annegien, Butler, Adam, Desmedt, Christine, Dirix, Luc, Dronov, Serge, Fatima, Aquila, Foekens, John A., Gerstung, Moritz, Hooijer, Gerrit KJ, Jang, Se Jin, Jones, David R., Kim, Hyung-Yong, King, Tari A., Krishnamurthy, Savitri, Lee, Hee Jin, Lee, Jeong-Yeon, Li, Yilong, McLaren, Stuart, Menzies, Andrew, Mustonen, Ville, O’Meara, Sarah, Pauporté, Iris, Pivot, Xavier, Purdie, Colin A., Raine, Keiran, Ramakrishnan, Kamna, Rodríguez-González, F. Germán, Romieu, Gilles, Sieuwerts, Anieta M., Simpson, Peter T, Shepherd, Rebecca, Stebbings, Lucy, Stefansson, Olafur A, Teague, Jon, Tommasi, Stefania, Treilleux, Isabelle, Van den Eynden, Gert G., Vermeulen, Peter, Vincent-Salomon, Anne, Yates, Lucy, Caldas, Carlos, van’t Veer, Laura, Tutt, Andrew, Knappskog, Stian, Tan, Benita Kiat Tee, Jonkers, Jos, Borg, Åke, Ueno, Naoto T, Sotiriou, Christos, Viari, Alain, Futreal, P. Andrew, Campbell, Peter J, Span, Paul N., Van Laere, Steven, Lakhani, Sunil R, Eyfjord, Jorunn E., Thompson, Alastair M., Birney, Ewan, Stunnenberg, Hendrik G, van de Vijver, Marc J, Martens, John W.M., Børresen-Dale, Anne-Lise, Richardson, Andrea L., Kong, Gu, Thomas, Gilles, Stratton, Michael R.
Publicado no Nature (2016)