Predicting small ligand binding sites in proteins using backbone structure

por Bordner, Andrew J.
Publicado 2008

Predicting protein-protein binding sites in membrane proteins

por Bordner, Andrew J
Publicado 2009

Orientation-dependent backbone-only residue pair scoring functions for fixed backbone protein design

por Bordner, Andrew J
Publicado 2010

Towards Universal Structure-Based Prediction of Class II MHC Epitopes for Diverse Allotypes

por Bordner, Andrew J.
Publicado 2010

Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces

por Bordner, Andrew J, Gorin, Andrey A
Publicado 2008

Prediction of the binding affinities of peptides to class II MHC using a regularized thermodynamic model

por Bordner, Andrew J, Mittelmann, Hans D
Publicado 2010

MultiRTA: A simple yet reliable method for predicting peptide binding affinities for multiple class II MHC allotypes

por Bordner, Andrew J, Mittelmann, Hans D
Publicado 2010

Efficient molecular mechanics simulations of the folding, orientation, and assembly of peptides in lipid bilayers using an implicit atomic solvation model

por Bordner, Andrew J., Zorman, Barry, Abagyan, Ruben
Publicado 2011

Elucidation of the active conformation of the amino terminus of receptor-bound secretin using intramolecular disulfide bond constraints

por Dong, Maoqing, Pinon, Delia I., Bordner, Andrew J., Miller, Laurence J.
Publicado 2010

Predicting the effects of amino acid replacements in peptide hormones on their binding affinities for class B GPCRs and application to the design of secretin receptor antagonists

por Te, Jerez A., Dong, Maoqing, Miller, Laurence J., Bordner, Andrew J.
Publicado 2012

Refinement of the pharmacophore of an agonist ligand of the secretin receptor using conformationally-constrained cyclic hexapeptides

por Dong, Maoqing, Narang, Pooja, Pinon, Delia I., Bordner, Andrew J., Miller, Laurence J.
Publicado 2010

Importance of Each Residue within Secretin for Receptor Binding and Biological Activity

por Dong, Maoqing, Le, Angela, Te, Jerez A., Pinon, Delia I., Bordner, Andrew J., Miller, Laurence J.
Publicado 2011

Glutamine residues in Q-loops of multidrug resistance protein MRP1 contribute to ATP binding via interaction with metal cofactor

por Yang, Runying, Hou, Yue-xian, Campbell, Chase A., Palaniyandi, Kanagaraj, Zhao, Qing, Bordner, Andrew J., Chang, Xiu-bao
Publicado 2011

Lactam Constraints Provide Insights into the Receptor-Bound Conformation of Secretin and Stabilize a Receptor Antagonist

por Dong, Maoqing, Te, Jerez A., Xu, Xiequn, Wang, Jinhui, Pinon, Delia I., Storjohann, Laura, Bordner, Andrew J., Miller, Laurence J.
Publicado 2011

Adenine Nucleotide Translocase Is Acetylated in Vivo in Human Muscle: Modeling Predicts a Decreased ADP Affinity and Altered Control of Oxidative Phosphorylation

por Mielke, Clinton, Lefort, Natalie, McLean, Carrie G., Cordova, Jeanine M., Langlais, Paul R., Bordner, Andrew J., Te, Jerez A., Ozkan, S. Banu, Willis, Wayne T., Mandarino, Lawrence J.
Publicado 2014

Breaking tolerance with engineered class I antigen-presenting molecules

por Parks, Christopher A., Henning, Kalli R., Pavelko, Kevin D., Hansen, Michael J., Van Keulen, Virginia P., Reed, Brendan K., Stone, Jennifer D., Schrum, Adam G., Gil, Diana, Kranz, David M., Bordner, Andrew J., Barry, Michael A., Pease, Larry R.
Publicado en Proc Natl Acad Sci U S A (2019)

Silent Tyrosinemia Type I Without Elevated Tyrosine or Succinylacetone Associated with Liver Cirrhosis and Hepatocellular Carcinoma

por Blackburn, Patrick R., Hickey, Raymond D., Nace, Rebecca A., Giama, Nasra H., Kraft, Daniel L., Bordner, Andrew J., Chaiteerakij, Roongruedee, McCormick, Jennifer B., Radulovic, Maja, Graham, Rondell P., Torbenson, Michael S., Tortorelli, Silvia, Scott, C. Ronald, Lindor, Noralane M., Milliner, Dawn S., Oglesbee, Devin, Al‐Qabandi, Wafa'a, Grompe, Markus, Gavrilov, Dimitar K., El‐Youssef, Mounif, Clark, Karl J., Atwal, Paldeep S., Roberts, Lewis R., Klee, Eric W., Ekker, Stephen C.
Publicado en Hum Mutat (2016)