Whole genome comparative analysis of transposable elements provides new insight into mechanisms of their inactivation in fungal genomes

Por Amselem, Joëlle, Lebrun, Marc-Henri, Quesneville, Hadi
Publicado no BMC Genomics (2015)

Evolution of the EKA family of powdery mildew avirulence-effector genes from the ORF 1 of a LINE retrotransposon

Por Amselem, Joelle, Vigouroux, Marielle, Oberhaensli, Simone, Brown, James K. M., Bindschedler, Laurence V., Skamnioti, Pari, Wicker, Thomas, Spanu, Pietro D., Quesneville, Hadi, Sacristán, Soledad
Publicado no BMC Genomics (2015)

Deciphering Genome Content and Evolutionary Relationships of Isolates from the Fungus Magnaporthe oryzae Attacking Different Host Plants

Por Chiapello, Hélène, Mallet, Ludovic, Guérin, Cyprien, Aguileta, Gabriela, Amselem, Joëlle, Kroj, Thomas, Ortega-Abboud, Enrique, Lebrun, Marc-Henri, Henrissat, Bernard, Gendrault, Annie, Rodolphe, François, Tharreau, Didier, Fournier, Elisabeth
Publicado no Genome Biol Evol (2015)

GnpIS: an information system to integrate genetic and genomic data from plants and fungi

Por Steinbach, Delphine, Alaux, Michael, Amselem, Joelle, Choisne, Nathalie, Durand, Sophie, Flores, Raphaël, Keliet, Aminah-Olivia, Kimmel, Erik, Lapalu, Nicolas, Luyten, Isabelle, Michotey, Célia, Mohellibi, Nacer, Pommier, Cyril, Reboux, Sébastien, Valdenaire, Dorothée, Verdelet, Daphné, Quesneville, Hadi
Publicado em 2013

Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts

Por Morel, Guillaume, Sterck, Lieven, Swennen, Dominique, Marcet-Houben, Marina, Onesime, Djamila, Levasseur, Anthony, Jacques, Noémie, Mallet, Sandrine, Couloux, Arnaux, Labadie, Karine, Amselem, Joëlle, Beckerich, Jean-Marie, Henrissat, Bernard, Van de Peer, Yves, Wincker, Patrick, Souciet, Jean-Luc, Gabaldón, Toni, Tinsley, Colin R., Casaregola, Serge
Publicado no Sci Rep (2015)

Corrigendum: Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts

Por Morel, Guillaume, Sterck, Lieven, Swennen, Dominique, Marcet-Houben, Marina, Onesime, Djamila, Levasseur, Anthony, Jacques, Noémie, Mallet, Sandrine, Couloux, Arnaux, Labadie, Karine, Amselem, Joëlle, Beckerich, Jean-Marie, Henrissat, Bernard, Van de Peer, Yves, Wincker, Patrick, Souciet, Jean-Luc, Gabaldón, Toni, Tinsley, Colin R., Casaregola, Serge
Publicado no Sci Rep (2015)

Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus

Por Perlin, Michael H, Amselem, Joelle, Fontanillas, Eric, Toh, Su San, Chen, Zehua, Goldberg, Jonathan, Duplessis, Sebastien, Henrissat, Bernard, Young, Sarah, Zeng, Qiandong, Aguileta, Gabriela, Petit, Elsa, Badouin, Helene, Andrews, Jared, Razeeq, Dominique, Gabaldón, Toni, Quesneville, Hadi, Giraud, Tatiana, Hood, Michael E., Schultz, David J., Cuomo, Christina A.
Publicado no BMC Genomics (2015)

The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release

Por Lesur, Isabelle, Le Provost, Grégoire, Bento, Pascal, Da Silva, Corinne, Leplé, Jean-Charles, Murat, Florent, Ueno, Saneyoshi, Bartholomé, Jerôme, Lalanne, Céline, Ehrenmann, François, Noirot, Céline, Burban, Christian, Léger, Valérie, Amselem, Joelle, Belser, Caroline, Quesneville, Hadi, Stierschneider, Michael, Fluch, Silvia, Feldhahn, Lasse, Tarkka, Mika, Herrmann, Sylvie, Buscot, François, Klopp, Christophe, Kremer, Antoine, Salse, Jérôme, Aury, Jean-Marc, Plomion, Christophe
Publicado no BMC Genomics (2015)

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

Por Rouxel, Thierry, Grandaubert, Jonathan, Hane, James K., Hoede, Claire, van de Wouw, Angela P., Couloux, Arnaud, Dominguez, Victoria, Anthouard, Véronique, Bally, Pascal, Bourras, Salim, Cozijnsen, Anton J., Ciuffetti, Lynda M., Degrave, Alexandre, Dilmaghani, Azita, Duret, Laurent, Fudal, Isabelle, Goodwin, Stephen B., Gout, Lilian, Glaser, Nicolas, Linglin, Juliette, Kema, Gert H. J., Lapalu, Nicolas, Lawrence, Christopher B., May, Kim, Meyer, Michel, Ollivier, Bénédicte, Poulain, Julie, Schoch, Conrad L., Simon, Adeline, Spatafora, Joseph W., Stachowiak, Anna, Turgeon, B. Gillian, Tyler, Brett M., Vincent, Delphine, Weissenbach, Jean, Amselem, Joëlle, Quesneville, Hadi, Oliver, Richard P., Wincker, Patrick, Balesdent, Marie-Hélène, Howlett, Barbara J.
Publicado em 2011

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

Por Duplessis, Sébastien, Cuomo, Christina A., Lin, Yao-Cheng, Aerts, Andrea, Tisserant, Emilie, Veneault-Fourrey, Claire, Joly, David L., Hacquard, Stéphane, Amselem, Joëlle, Cantarel, Brandi L., Chiu, Readman, Coutinho, Pedro M., Feau, Nicolas, Field, Matthew, Frey, Pascal, Gelhaye, Eric, Goldberg, Jonathan, Grabherr, Manfred G., Kodira, Chinnappa D., Kohler, Annegret, Kües, Ursula, Lindquist, Erika A., Lucas, Susan M., Mago, Rohit, Mauceli, Evan, Morin, Emmanuelle, Murat, Claude, Pangilinan, Jasmyn L., Park, Robert, Pearson, Matthew, Quesneville, Hadi, Rouhier, Nicolas, Sakthikumar, Sharadha, Salamov, Asaf A., Schmutz, Jeremy, Selles, Benjamin, Shapiro, Harris, Tanguay, Philippe, Tuskan, Gerald A., Henrissat, Bernard, Van de Peer, Yves, Rouzé, Pierre, Ellis, Jeffrey G., Dodds, Peter N., Schein, Jacqueline E., Zhong, Shaobin, Hamelin, Richard C., Grigoriev, Igor V., Szabo, Les J., Martin, Francis
Publicado em 2011

Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea

Por Amselem, Joelle, Cuomo, Christina A., van Kan, Jan A. L., Viaud, Muriel, Benito, Ernesto P., Couloux, Arnaud, Coutinho, Pedro M., de Vries, Ronald P., Dyer, Paul S., Fillinger, Sabine, Fournier, Elisabeth, Gout, Lilian, Hahn, Matthias, Kohn, Linda, Lapalu, Nicolas, Plummer, Kim M., Pradier, Jean-Marc, Quévillon, Emmanuel, Sharon, Amir, Simon, Adeline, ten Have, Arjen, Tudzynski, Bettina, Tudzynski, Paul, Wincker, Patrick, Andrew, Marion, Anthouard, Véronique, Beever, Ross E., Beffa, Rolland, Benoit, Isabelle, Bouzid, Ourdia, Brault, Baptiste, Chen, Zehua, Choquer, Mathias, Collémare, Jérome, Cotton, Pascale, Danchin, Etienne G., Da Silva, Corinne, Gautier, Angélique, Giraud, Corinne, Giraud, Tatiana, Gonzalez, Celedonio, Grossetete, Sandrine, Güldener, Ulrich, Henrissat, Bernard, Howlett, Barbara J., Kodira, Chinnappa, Kretschmer, Matthias, Lappartient, Anne, Leroch, Michaela, Levis, Caroline, Mauceli, Evan, Neuvéglise, Cécile, Oeser, Birgitt, Pearson, Matthew, Poulain, Julie, Poussereau, Nathalie, Quesneville, Hadi, Rascle, Christine, Schumacher, Julia, Ségurens, Béatrice, Sexton, Adrienne, Silva, Evelyn, Sirven, Catherine, Soanes, Darren M., Talbot, Nicholas J., Templeton, Matt, Yandava, Chandri, Yarden, Oded, Zeng, Qiandong, Rollins, Jeffrey A., Lebrun, Marc-Henri, Dickman, Marty
Publicado em 2011