High salt solution structure of a left-handed RNA double helix

Por Popenda, Mariusz, Milecki, Jan, Adamiak, Ryszard W.
Publicado em 2004

New, extended hairpin form of the TAR-2 RNA domain points to the structural polymorphism at the 5′ end of the HIV-2 leader RNA

Por Pachulska-Wieczorek, Katarzyna, Purzycka, Katarzyna J., Adamiak, Ryszard W.
Publicado em 2006

RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures

Por Popenda, Mariusz, Błażewicz, Marek, Szachniuk, Marta, Adamiak, Ryszard W.
Publicado em 2008

The in vitro loose dimer structure and rearrangements of the HIV-2 leader RNA

Por Purzycka, Katarzyna J., Pachulska-Wieczorek, Katarzyna, Adamiak, Ryszard W.
Publicado em 2011

Noncanonical G(syn)–G(anti) base pairs stabilized by sulphate anions in two X-ray structures of the (GUGGUCUGAUGAGGCC) RNA duplex

Por Rypniewski, Wojciech, Adamiak, Dorota A., Milecki, Jan, Adamiak, Ryszard W.
Publicado em 2008

The 1.19 Å X-ray structure of 2′-O-Me(CGCGCG)(2) duplex shows dehydrated RNA with 2-methyl-2,4-pentanediol in the minor groove

Por Adamiak, Dorota A., Rypniewski, Wojciech R., Milecki, Jan, Adamiak, Ryszard W.
Publicado em 2001

The bulge region of HIV-1 TAR RNA binds metal ions in solution

Por Olejniczak, Mikołaj, Gdaniec, Zofia, Fischer, Artur, Grabarkiewicz, Tomasz, Bielecki, Łukasz, Adamiak, Ryszard W.
Publicado em 2002

The matrix domain contributes to the nucleic acid chaperone activity of HIV-2 Gag

Por Pachulska-Wieczorek, Katarzyna, Błaszczyk, Leszek, Biesiada, Marcin, Adamiak, Ryszard W., Purzycka, Katarzyna J.
Publicado no Retrovirology (2016)

New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation

Por Antczak, Maciej, Popenda, Mariusz, Zok, Tomasz, Zurkowski, Michal, Adamiak, Ryszard W, Szachniuk, Marta
Publicado no Bioinformatics (2018)

RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures

Por Antczak, Maciej, Zok, Tomasz, Osowiecki, Maciej, Popenda, Mariusz, Adamiak, Ryszard W., Szachniuk, Marta
Publicado no BMC Bioinformatics (2018)

RNApdbee—a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs

Por Antczak, Maciej, Zok, Tomasz, Popenda, Mariusz, Lukasiak, Piotr, Adamiak, Ryszard W., Blazewicz, Jacek, Szachniuk, Marta
Publicado em 2014

RNAssess—a web server for quality assessment of RNA 3D structures

Por Lukasiak, Piotr, Antczak, Maciej, Ratajczak, Tomasz, Szachniuk, Marta, Popenda, Mariusz, Adamiak, Ryszard W., Blazewicz, Jacek
Publicado no Nucleic Acids Res (2015)

RNApdbee 2.0: multifunctional tool for RNA structure annotation

Por Zok, Tomasz, Antczak, Maciej, Zurkowski, Michal, Popenda, Mariusz, Blazewicz, Jacek, Adamiak, Ryszard W, Szachniuk, Marta
Publicado no Nucleic Acids Res (2018)

RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures

Por Popenda, Mariusz, Szachniuk, Marta, Blazewicz, Marek, Wasik, Szymon, Burke, Edmund K, Blazewicz, Jacek, Adamiak, Ryszard W
Publicado em 2010

Automated 3D structure composition for large RNAs

Por Popenda, Mariusz, Szachniuk, Marta, Antczak, Maciej, Purzycka, Katarzyna J., Lukasiak, Piotr, Bartol, Natalia, Blazewicz, Jacek, Adamiak, Ryszard W.
Publicado em 2012

RNAlyzer—novel approach for quality analysis of RNA structural models

Por Lukasiak, Piotr, Antczak, Maciej, Ratajczak, Tomasz, Bujnicki, Janusz M., Szachniuk, Marta, Adamiak, Ryszard W., Popenda, Mariusz, Blazewicz, Jacek
Publicado em 2013

A normal genetic variation modulates synaptic MMP‐9 protein levels and the severity of schizophrenia symptoms

Por Lepeta, Katarzyna, Purzycka, Katarzyna J, Pachulska‐Wieczorek, Katarzyna, Mitjans, Marina, Begemann, Martin, Vafadari, Behnam, Bijata, Krystian, Adamiak, Ryszard W, Ehrenreich, Hannelore, Dziembowska, Magdalena, Kaczmarek, Leszek
Publicado no EMBO Mol Med (2017)

RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures

Por Miao, Zhichao, Adamiak, Ryszard W., Blanchet, Marc-Frédérick, Boniecki, Michal, Bujnicki, Janusz M., Chen, Shi-Jie, Cheng, Clarence, Chojnowski, Grzegorz, Chou, Fang-Chieh, Cordero, Pablo, Cruz, José Almeida, Ferré-D'Amaré, Adrian R., Das, Rhiju, Ding, Feng, Dokholyan, Nikolay V., Dunin-Horkawicz, Stanislaw, Kladwang, Wipapat, Krokhotin, Andrey, Lach, Grzegorz, Magnus, Marcin, Major, François, Mann, Thomas H., Masquida, Benoît, Matelska, Dorota, Meyer, Mélanie, Peselis, Alla, Popenda, Mariusz, Purzycka, Katarzyna J., Serganov, Alexander, Stasiewicz, Juliusz, Szachniuk, Marta, Tandon, Arpit, Tian, Siqi, Wang, Jian, Xiao, Yi, Xu, Xiaojun, Zhang, Jinwei, Zhao, Peinan, Zok, Tomasz, Westhof, Eric
Publicado no RNA (2015)

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme

Por Miao, Zhichao, Adamiak, Ryszard W., Antczak, Maciej, Batey, Robert T., Becka, Alexander J., Biesiada, Marcin, Boniecki, Michał J., Bujnicki, Janusz M., Chen, Shi-Jie, Cheng, Clarence Yu, Chou, Fang-Chieh, Ferré-D'Amaré, Adrian R., Das, Rhiju, Dawson, Wayne K., Ding, Feng, Dokholyan, Nikolay V., Dunin-Horkawicz, Stanisław, Geniesse, Caleb, Kappel, Kalli, Kladwang, Wipapat, Krokhotin, Andrey, Łach, Grzegorz E., Major, François, Mann, Thomas H., Magnus, Marcin, Pachulska-Wieczorek, Katarzyna, Patel, Dinshaw J., Piccirilli, Joseph A., Popenda, Mariusz, Purzycka, Katarzyna J., Ren, Aiming, Rice, Greggory M., Santalucia, John, Sarzynska, Joanna, Szachniuk, Marta, Tandon, Arpit, Trausch, Jeremiah J., Tian, Siqi, Wang, Jian, Weeks, Kevin M., Williams, Benfeard, Xiao, Yi, Xu, Xiaojun, Zhang, Dong, Zok, Tomasz, Westhof, Eric
Publicado no RNA (2017)