Statistical characterization of multiple-reaction monitoring mass spectrometry (MRM-MS) assays for quantitative proteomics

par Mani, D R, Abbatiello, Susan E, Carr, Steven A
Publié 2012

Automated Detection of Inaccurate and Imprecise Transitions in Peptide Quantification by Multiple Reaction Monitoring Mass Spectrometry

par Abbatiello, Susan E., Mani, D. R., Keshishian, Hasmik, Carr, Steven A.
Publié 2009

Improved Sensitivity of Ultralow Flow LC–MS-Based Proteomic Profiling of Limited Samples Using Monolithic Capillary Columns and FAIMS Technology

par Greguš, Michal, Kostas, James C., Ray, Somak, Abbatiello, Susan E., Ivanov, Alexander R.
Publié dans Anal Chem (2020)

MSstatsQC: Longitudinal System Suitability Monitoring and Quality Control for Targeted Proteomic Experiments

par Dogu, Eralp, Mohammad-Taheri, Sara, Abbatiello, Susan E., Bereman, Michael S., MacLean, Brendan, Schilling, Birgit, Vitek, Olga
Publié dans Mol Cell Proteomics (2017)

Comprehensive LESA Mass Spectrometry Imaging of Intact Proteins by Integration of Cylindrical FAIMS

par Griffiths, Rian L., Hughes, James W., Abbatiello, Susan E., Belford, Michael W., Styles, Iain B., Cooper, Helen J.
Publié dans Anal Chem (2020)

Nonlinear Regression Improves Accuracy of Characterization of Multiplexed Mass Spectrometric Assays

par Galitzine, Cyril, Egertson, Jarrett D., Abbatiello, Susan, Henderson, Clark M., Pino, Lindsay K., MacCoss, Michael, Hoofnagle, Andrew N., Vitek, Olga
Publié dans Mol Cell Proteomics (2018)

Effect of Collision Energy Optimization on the Measurement of Peptides by Selected Reaction Monitoring (SRM) Mass Spectrometry

par MacLean, Brendan, Tomazela, Daniela M., Abbatiello, Susan E., Zhang, Shucha, Whiteaker, Jeffrey R., Paulovich, Amanda G., Carr, Steven A., MacCoss, Michael J.
Publié 2010

Deeper Protein Identification Using Field Asymmetric Ion Mobility Spectrometry in Top-Down Proteomics

par Gerbasi, Vincent R., Melani, Rafael D., Abbatiello, Susan E., Belford, Michael W., Huguet, Romain, McGee, John P., Dayhoff, Dawson, Thomas, Paul M., Kelleher, Neil L.
Publié dans Anal Chem (2021)

Evaluation of Large Scale Quantitative Proteomic Assay Development Using Peptide Affinity-based Mass Spectrometry

par Whiteaker, Jeffrey R., Zhao, Lei, Abbatiello, Susan E., Burgess, Michael, Kuhn, Eric, Lin, ChenWei, Pope, Matthew E., Razavi, Morteza, Anderson, N. Leigh, Pearson, Terry W., Carr, Steven A., Paulovich, Amanda G.
Publié 2011

Comprehensive Single-Shot Proteomics with FAIMS on a Hybrid Orbitrap Mass Spectrometer

par Hebert, Alexander S., Prasad, Satendra, Belford, Michael W., Bailey, Derek J., McAlister, Graeme C., Abbatiello, Susan E., Huguet, Romain, Wouters, Eloy R., Dunyach, Jean-Jacques, Brademan, Dain R., Westphall, Michael S., Coon, Joshua J.
Publié dans Anal Chem (2018)

Characterization and Optimization of Multiplexed Quantitative Analyses Using High-Field Asymmetric-Waveform Ion Mobility Mass Spectrometry

par Schweppe, Devin K., Prasad, Satendra, Belford, Michael W., Navarrete-Perea, José, Bailey, Derek J., Huguet, Romain, Jedrychowski, Mark P., Rad, Ramin, McAlister, Graeme, Abbatiello, Susan E., Woulters, Eloy R., Zabrouskov, Vlad, Dunyach, Jean-Jacques, Paulo, João A., Gygi, Steven P.
Publié dans Anal Chem (2019)

A framework for installable external tools in Skyline

par Broudy, Daniel, Killeen, Trevor, Choi, Meena, Shulman, Nicholas, Mani, Deepak R., Abbatiello, Susan E., Mani, Deepak, Ahmad, Rushdy, Sahu, Alexandria K., Schilling, Birgit, Tamura, Kaipo, Boss, Yuval, Sharma, Vagisha, Gibson, Bradford W., Carr, Steven A., Vitek, Olga, MacCoss, Michael J., MacLean, Brendan
Publié 2014

Reduced-representation Phosphosignatures Measured by Quantitative Targeted MS Capture Cellular States and Enable Large-scale Comparison of Drug-induced Phenotypes

par Abelin, Jennifer G., Patel, Jinal, Lu, Xiaodong, Feeney, Caitlin M., Fagbami, Lola, Creech, Amanda L., Hu, Roger, Lam, Daniel, Davison, Desiree, Pino, Lindsay, Qiao, Jana W., Kuhn, Eric, Officer, Adam, Li, Jianxue, Abbatiello, Susan, Subramanian, Aravind, Sidman, Richard, Snyder, Evan, Carr, Steven A., Jaffe, Jacob D.
Publié dans Mol Cell Proteomics (2016)

New Guidelines for Publication of Manuscripts Describing Development and Application of Targeted Mass Spectrometry Measurements of Peptides and Proteins

par Abbatiello, Susan, Ackermann, Bradley L., Borchers, Christoph, Bradshaw, Ralph A., Carr, Steven A., Chalkley, Robert, Choi, Meena, Deutsch, Eric, Domon, Bruno, Hoofnagle, Andrew N., Keshishian, Hasmik, Kuhn, Eric, Liebler, Daniel C., MacCoss, Michael, MacLean, Brendan, Mani, DR, Neubert, Hendrik, Smith, Derek, Vitek, Olga, Zimmerman, Lisa
Publié dans Mol Cell Proteomics (2017)

Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins

par Kennedy, Jacob J., Abbatiello, Susan E., Kim, Kyunggon, Yan, Ping, Whiteaker, Jeffrey R., Lin, Chenwei, Kim, Jun Seok, Zhang, Yuzheng, Wang, Xianlong, Ivey, Richard G., Zhao, Lei, Min, Hophil, Lee, Youngju, Yu, Myeong-Hee, Yang, Eun Gyeong, Lee, Cheolju, Wang, Pei, Rodriguez, Henry, Kim, Youngsoo, Carr, Steven A., Paulovich, Amanda G.
Publié 2013

Large-Scale Interlaboratory Study to Develop, Analytically Validate and Apply Highly Multiplexed, Quantitative Peptide Assays to Measure Cancer-Relevant Proteins in Plasma

par Abbatiello, Susan E., Schilling, Birgit, Mani, D. R., Zimmerman, Lisa J., Hall, Steven C., MacLean, Brendan, Albertolle, Matthew, Allen, Simon, Burgess, Michael, Cusack, Michael P., Gosh, Mousumi, Hedrick, Victoria, Held, Jason M., Inerowicz, H. Dorota, Jackson, Angela, Keshishian, Hasmik, Kinsinger, Christopher R., Lyssand, John, Makowski, Lee, Mesri, Mehdi, Rodriguez, Henry, Rudnick, Paul, Sadowski, Pawel, Sedransk, Nell, Shaddox, Kent, Skates, Stephen J., Kuhn, Eric, Smith, Derek, Whiteaker, Jeffery R., Whitwell, Corbin, Zhang, Shucha, Borchers, Christoph H., Fisher, Susan J., Gibson, Bradford W., Liebler, Daniel C., MacCoss, Michael J., Neubert, Thomas A., Paulovich, Amanda G., Regnier, Fred E., Tempst, Paul, Carr, Steven A.
Publié dans Mol Cell Proteomics (2015)

Targeted Peptide Measurements in Biology and Medicine: Best Practices for Mass Spectrometry-based Assay Development Using a Fit-for-Purpose Approach

par Carr, Steven A., Abbatiello, Susan E., Ackermann, Bradley L., Borchers, Christoph, Domon, Bruno, Deutsch, Eric W., Grant, Russell P., Hoofnagle, Andrew N., Hüttenhain, Ruth, Koomen, John M., Liebler, Daniel C., Liu, Tao, MacLean, Brendan, Mani, DR, Mansfield, Elizabeth, Neubert, Hendrik, Paulovich, Amanda G., Reiter, Lukas, Vitek, Olga, Aebersold, Ruedi, Anderson, Leigh, Bethem, Robert, Blonder, Josip, Boja, Emily, Botelho, Julianne, Boyne, Michael, Bradshaw, Ralph A., Burlingame, Alma L., Chan, Daniel, Keshishian, Hasmik, Kuhn, Eric, Kinsinger, Christopher, Lee, Jerry S.H., Lee, Sang-Won, Moritz, Robert, Oses-Prieto, Juan, Rifai, Nader, Ritchie, James, Rodriguez, Henry, Srinivas, Pothur R., Townsend, R. Reid, Van Eyk, Jennifer, Whiteley, Gordon, Wiita, Arun, Weintraub, Susan
Publié 2014

Design, Implementation and Multisite Evaluation of a System Suitability Protocol for the Quantitative Assessment of Instrument Performance in Liquid Chromatography-Multiple Reactio...

par Abbatiello, Susan E., Mani, D. R., Schilling, Birgit, MacLean, Brendan, Zimmerman, Lisa J., Feng, Xingdong, Cusack, Michael P., Sedransk, Nell, Hall, Steven C., Addona, Terri, Allen, Simon, Dodder, Nathan G., Ghosh, Mousumi, Held, Jason M., Hedrick, Victoria, Inerowicz, H. Dorota, Jackson, Angela, Keshishian, Hasmik, Kim, Jong Won, Lyssand, John S., Riley, C. Paige, Rudnick, Paul, Sadowski, Pawel, Shaddox, Kent, Smith, Derek, Tomazela, Daniela, Wahlander, Asa, Waldemarson, Sofia, Whitwell, Corbin A., You, Jinsam, Zhang, Shucha, Kinsinger, Christopher R., Mesri, Mehdi, Rodriguez, Henry, Borchers, Christoph H., Buck, Charles, Fisher, Susan J., Gibson, Bradford W., Liebler, Daniel, MacCoss, Michael, Neubert, Thomas A., Paulovich, Amanda, Regnier, Fred, Skates, Steven J., Tempst, Paul, Wang, Mu, Carr, Steven A.
Publié 2013

Using the CPTAC Assay Portal to identify and implement highly characterized targeted proteomics assays

par Whiteaker, Jeffrey R, Halusa, Goran N, Hoofnagle, Andrew N, Sharma, Vagisha, MacLean, Brendan, Yan, Ping, Wrobel, John A, Kennedy, Jacob, Mani, DR, Zimmerman, Lisa J, Meyer, Matthew R., Mesri, Mehdi, Abbatiello, Susan E, Boja, Emily, Carr, Steven A., Chan, Daniel W., Chen, Xian, Chen, Jing, Davies, Sherri R, Ellis, Matthew J. C., Fenyö, David, Hiltke, Tara, Ketchum, Karen A., Kinsinger, Chris, Kuhn, Eric, Liebler, Daniel C., Lin, De, Liu, Tao, Loss, Michael, MacCoss, Michael J, Qian, Wei-Jun, Rivers, Robert, Rodland, Karin D., Ruggles, Kelly V, Scott, Mitchell G, Smith, Richard D., Thomas, Stefani, Townsend, R. Reid, Whiteley, Gordon, Wu, Chaochao, Zhang, Hui, Zhang, Zhen, Rodriguez, Henry, Paulovich, Amanda G
Publié dans Methods Mol Biol (2016)

Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma

par Addona, Terri A, Abbatiello, Susan E, Schilling, Birgit, Skates, Steven J, Mani, D R, Bunk, David M, Spiegelman, Clifford H, Zimmerman, Lisa J, Ham, Amy-Joan L, Keshishian, Hasmik, Hall, Steven C, Allen, Simon, Blackman, Ronald K, Borchers, Christoph H, Buck, Charles, Cardasis, Helene L, Cusack, Michael P, Dodder, Nathan G, Gibson, Bradford W, Held, Jason M, Hiltke, Tara, Jackson, Angela, Johansen, Eric B, Kinsinger, Christopher R, Li, Jing, Mesri, Mehdi, Neubert, Thomas A, Niles, Richard K, Pulsipher, Trenton C, Ransohoff, David, Rodriguez, Henry, Rudnick, Paul A, Smith, Derek, Tabb, David L, Tegeler, Tony J, Variyath, Asokan M, Vega-Montoto, Lorenzo J, Wahlander, Åsa, Waldemarson, Sofia, Wang, Mu, Whiteaker, Jeffrey R, Zhao, Lei, Anderson, N Leigh, Fisher, Susan J, Liebler, Daniel C, Paulovich, Amanda G, Regnier, Fred E, Tempst, Paul, Carr, Steven A
Publié 2009