Optimization and evaluation of a proportional derivative controller for planar arm movement

Bằng Jagodnik, Kathleen M., van den Bogert, Antonie J.
Được phát hành 2010

An Optimized Proportional-Derivative Controller for the Human Upper Extremity with Gravity

Bằng Jagodnik, Kathleen M., Blana, Dimitra, van den Bogert, Antonie J., Kirsch, Robert F.
Xuất bản năm J Biomech (2015)

Drug Gene Budger (DGB): an application for ranking drugs to modulate a specific gene based on transcriptomic signatures

Bằng Wang, Zichen, He, Edward, Sani, Kevin, Jagodnik, Kathleen M, Silverstein, Moshe C, Ma’ayan, Avi
Xuất bản năm Bioinformatics (2019)

Training an Actor-Critic Reinforcement Learning Controller for Arm Movement Using Human-Generated Rewards

Bằng Jagodnik, Kathleen M., Thomas, Philip S., van den Bogert, Antonie J., Branicky, Michael S., Kirsch, Robert F.
Xuất bản năm IEEE Trans Neural Syst Rehabil Eng (2017)

EnrichrBot: Twitter bot tracking tweets about human genes

Bằng Bartal, Alon, Lachmann, Alexander, Clarke, Daniel J B, Seiden, Allison H, Jagodnik, Kathleen M, Ma’ayan, Avi
Xuất bản năm Bioinformatics (2020)

Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses

Bằng Torre, Denis, Krawczuk, Patrycja, Jagodnik, Kathleen M., Lachmann, Alexander, Wang, Zichen, Wang, Lily, Kuleshov, Maxim V., Ma’ayan, Avi
Xuất bản năm Sci Data (2018)

Massive mining of publicly available RNA-seq data from human and mouse

Bằng Lachmann, Alexander, Torre, Denis, Keenan, Alexandra B., Jagodnik, Kathleen M., Lee, Hoyjin J., Wang, Lily, Silverstein, Moshe C., Ma’ayan, Avi
Xuất bản năm Nat Commun (2018)

ChEA3: transcription factor enrichment analysis by orthogonal omics integration

Bằng Keenan, Alexandra B, Torre, Denis, Lachmann, Alexander, Leong, Ariel K, Wojciechowicz, Megan L, Utti, Vivian, Jagodnik, Kathleen M, Kropiwnicki, Eryk, Wang, Zichen, Ma’ayan, Avi
Xuất bản năm Nucleic Acids Res (2019)

Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning

Bằng Kropiwnicki, Eryk, Evangelista, John E, Stein, Daniel J, Clarke, Daniel J B, Lachmann, Alexander, Kuleshov, Maxim V, Jeon, Minji, Jagodnik, Kathleen M, Ma’ayan, Avi
Xuất bản năm Database (Oxford) (2021)

The COVID-19 Gene and Drug Set Library

Bằng Kuleshov, Maxim V., Clarke, Daniel J.B., Kropiwnicki, Eryk, Jagodnik, Kathleen M., Bartal, Alon, Evangelista, John E., Zhou, Abigail, Ferguson, Laura B., Lachmann, Alexander, Ma’ayan, Avi
Xuất bản năm Res Sq (2020)

GEN3VA: aggregation and analysis of gene expression signatures from related studies

Bằng Gundersen, Gregory W., Jagodnik, Kathleen M., Woodland, Holly, Fernandez, Nicholas F., Sani, Kevin, Dohlman, Anders B., Ung, Peter Man-Un, Monteiro, Caroline D., Schlessinger, Avner, Ma’ayan, Avi
Xuất bản năm BMC Bioinformatics (2016)

Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center

Bằng Stathias, Vasileios, Koleti, Amar, Vidović, Dušica, Cooper, Daniel J., Jagodnik, Kathleen M., Terryn, Raymond, Forlin, Michele, Chung, Caty, Torre, Denis, Ayad, Nagi, Medvedovic, Mario, Ma'ayan, Avi, Pillai, Ajay, Schürer, Stephan C.
Xuất bản năm Sci Data (2018)

Gene Set Knowledge Discovery with Enrichr

Bằng Xie, Zhuorui, Bailey, Allison, Kuleshov, Maxim V., Clarke, Daniel J.B., Evangelista, John E., Jenkins, Sherry L., Lachmann, Alexander, Wojciechowicz, Megan L., Kropiwnicki, Eryk, Jagodnik, Kathleen M., Jeon, Minji, Ma’ayan, Avi
Xuất bản năm Curr Protoc (2021)

Developing a Framework for Digital Objects in the Big Data to Knowledge (BD2K) Commons: Report from the Commons Framework Pilots Workshop

Bằng Jagodnik, Kathleen M., Koplev, Simon, Jenkins, Sherry, Ohno-Machado, Lucila, Paten, Benedict, Schurer, Stephan C., Dumontier, Michel, Verborgh, Ruben, Bui, Alex, Ping, Peipei, McKenna, Neil J., Madduri, Ravi, Pillai, Ajay, Ma’ayan, Avi
Xuất bản năm J Biomed Inform (2017)

The COVID-19 Drug and Gene Set Library

Bằng Kuleshov, Maxim V., Stein, Daniel J., Clarke, Daniel J.B., Kropiwnicki, Eryk, Jagodnik, Kathleen M., Bartal, Alon, Evangelista, John E., Hom, Jason, Cheng, Minxuan, Bailey, Allison, Zhou, Abigail, Ferguson, Laura B., Lachmann, Alexander, Ma'ayan, Avi
Xuất bản năm Patterns (N Y) (2020)

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

Bằng Kuleshov, Maxim V., Jones, Matthew R., Rouillard, Andrew D., Fernandez, Nicolas F., Duan, Qiaonan, Wang, Zichen, Koplev, Simon, Jenkins, Sherry L., Jagodnik, Kathleen M., Lachmann, Alexander, McDermott, Michael G., Monteiro, Caroline D., Gundersen, Gregory W., Ma'ayan, Avi
Xuất bản năm Nucleic Acids Res (2016)

Appyters: Turning Jupyter Notebooks into data-driven web apps

Bằng Clarke, Daniel J.B., Jeon, Minji, Stein, Daniel J., Moiseyev, Nicole, Kropiwnicki, Eryk, Dai, Charles, Xie, Zhuorui, Wojciechowicz, Megan L., Litz, Skylar, Hom, Jason, Evangelista, John Erol, Goldman, Lucas, Zhang, Serena, Yoon, Christine, Ahamed, Tahmid, Bhuiyan, Samantha, Cheng, Minxuan, Karam, Julie, Jagodnik, Kathleen M., Shu, Ingrid, Lachmann, Alexander, Ayling, Sam, Jenkins, Sherry L., Ma'ayan, Avi
Xuất bản năm Patterns (N Y) (2021)

Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data

Bằng Koleti, Amar, Terryn, Raymond, Stathias, Vasileios, Chung, Caty, Cooper, Daniel J, Turner, John P, Vidović, Dušica, Forlin, Michele, Kelley, Tanya T, D’Urso, Alessandro, Allen, Bryce K, Torre, Denis, Jagodnik, Kathleen M, Wang, Lily, Jenkins, Sherry L, Mader, Christopher, Niu, Wen, Fazel, Mehdi, Mahi, Naim, Pilarczyk, Marcin, Clark, Nicholas, Shamsaei, Behrouz, Meller, Jarek, Vasiliauskas, Juozas, Reichard, John, Medvedovic, Mario, Ma’ayan, Avi, Pillai, Ajay, Schürer, Stephan C
Xuất bản năm Nucleic Acids Res (2018)

FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources

Bằng Clarke, Daniel J.B., Wang, Lily, Jones, Alex, Wojciechowicz, Megan L., Torre, Denis, Jagodnik, Kathleen M., Jenkins, Sherry L., McQuilton, Peter, Flamholz, Zachary, Silverstein, Moshe C., Schilder, Brian M., Robasky, Kimberly, Castillo, Claris, Idaszak, Ray, Ahalt, Stanley C., Williams, Jason, Schurer, Stephan, Cooper, Daniel J., de Miranda Azevedo, Ricardo, Klenk, Juergen A., Haendel, Melissa A., Nedzel, Jared, Avillach, Paul, Shimoyama, Mary E., Harris, Rayna M., Gamble, Meredith, Poten, Rudy, Charbonneau, Amanda L., Larkin, Jennie, Brown, C. Titus, Bonazzi, Vivien R., Dumontier, Michel J., Sansone, Susanna-Assunta, Ma’ayan, Avi
Xuất bản năm Cell Syst (2019)

Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd

Bằng Wang, Zichen, Monteiro, Caroline D., Jagodnik, Kathleen M., Fernandez, Nicolas F., Gundersen, Gregory W., Rouillard, Andrew D., Jenkins, Sherry L., Feldmann, Axel S., Hu, Kevin S., McDermott, Michael G., Duan, Qiaonan, Clark, Neil R., Jones, Matthew R., Kou, Yan, Goff, Troy, Woodland, Holly, Amaral, Fabio M R., Szeto, Gregory L., Fuchs, Oliver, Schüssler-Fiorenza Rose, Sophia M., Sharma, Shvetank, Schwartz, Uwe, Bausela, Xabier Bengoetxea, Szymkiewicz, Maciej, Maroulis, Vasileios, Salykin, Anton, Barra, Carolina M., Kruth, Candice D., Bongio, Nicholas J., Mathur, Vaibhav, Todoric, Radmila D, Rubin, Udi E., Malatras, Apostolos, Fulp, Carl T., Galindo, John A., Motiejunaite, Ruta, Jüschke, Christoph, Dishuck, Philip C., Lahl, Katharina, Jafari, Mohieddin, Aibar, Sara, Zaravinos, Apostolos, Steenhuizen, Linda H., Allison, Lindsey R., Gamallo, Pablo, de Andres Segura, Fernando, Dae Devlin, Tyler, Pérez-García, Vicente, Ma'ayan, Avi
Xuất bản năm Nat Commun (2016)