Large-scale network analysis reveals the sequence space architecture of antibody repertoires

Por Miho, Enkelejda, Roškar, Rok, Greiff, Victor, Reddy, Sai T.
Publicado no Nat Commun (2019)

Editorial: Methods and Applications of Computational Immunology

Por Chain, Benny, Greiff, Victor, Textor, Johannes, Yaari, Gur
Publicado no Front Immunol (2019)

A bioinformatic framework for immune repertoire diversity profiling enables detection of immunological status

Por Greiff, Victor, Bhat, Pooja, Cook, Skylar C., Menzel, Ulrike, Kang, Wenjing, Reddy, Sai T.
Publicado no Genome Med (2015)

Computational Strategies for Dissecting the High-Dimensional Complexity of Adaptive Immune Repertoires

Por Miho, Enkelejda, Yermanos, Alexander, Weber, Cédric R., Berger, Christoph T., Reddy, Sai T., Greiff, Victor
Publicado no Front Immunol (2018)

IgM Antibody Repertoire Fingerprints in Mice Are Personalized but Robust to Viral Infection Status

Por Yermanos, Alexander, Kräutler, Nike Julia, Pedrioli, Alessandro, Menzel, Ulrike, Greiff, Victor, Stadler, Tanja, Oxenius, Annette, Reddy, Sai T.
Publicado no Front Cell Infect Microbiol (2020)

Extended plasma half-life of albumin-binding domain fused human IgA upon pH-dependent albumin engagement of human FcRn in vitro and in vivo

Por Mester, Simone, Evers, Mitchell, Meyer, Saskia, Nilsen, Jeannette, Greiff, Victor, Sandlie, Inger, Leusen, Jeanette, Andersen, Jan Terje
Publicado no MAbs (2021)

A minimal model of peptide binding predicts ensemble properties of serum antibodies

Por Greiff, Victor, Redestig, Henning, Lück, Juliane, Bruni, Nicole, Valai, Atijeh, Hartmann, Susanne, Rausch, Sebastian, Schuchhardt, Johannes, Or-Guil, Michal
Publicado em 2012

High-throughput antibody engineering in mammalian cells by CRISPR/Cas9-mediated homology-directed mutagenesis

Por Mason, Derek M, Weber, Cédric R, Parola, Cristina, Meng, Simon M, Greiff, Victor, Kelton, William J, Reddy, Sai T
Publicado no Nucleic Acids Res (2018)

immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking

Por Weber, Cédric R, Akbar, Rahmad, Yermanos, Alexander, Pavlović, Milena, Snapkov, Igor, Sandve, Geir K, Reddy, Sai T, Greiff, Victor
Publicado no Bioinformatics (2020)

Comprehensive Evaluation and Optimization of Amplicon Library Preparation Methods for High-Throughput Antibody Sequencing

Por Menzel, Ulrike, Greiff, Victor, Khan, Tarik A., Haessler, Ulrike, Hellmann, Ina, Friedensohn, Simon, Cook, Skylar C., Pogson, Mark, Reddy, Sai T.
Publicado em 2014

Quantitative assessment of the robustness of next-generation sequencing of antibody variable gene repertoires from immunized mice

Por Greiff, Victor, Menzel, Ulrike, Haessler, Ulrike, Cook, Skylar C, Friedensohn, Simon, Khan, Tarik A, Pogson, Mark, Hellmann, Ina, Reddy, Sai T
Publicado no BMC Immunol (2014)

Influenza vaccine response profiles are affected by vaccine preparation and preexisting immunity, but not HIV infection

Por Berger, Christoph T, Greiff, Victor, Mehling, Matthias, Fritz, Stefanie, Meier, Marc A, Hoenger, Gideon, Conen, Anna, Recher, Mike, Battegay, Manuel, Reddy, Sai T, Hess, Christoph
Publicado no Hum Vaccin Immunother (2015)

The TCR Repertoire Reconstitution in Multiple Sclerosis: Comparing One-Shot and Continuous Immunosuppressive Therapies

Por Amoriello, Roberta, Greiff, Victor, Aldinucci, Alessandra, Bonechi, Elena, Carnasciali, Alberto, Peruzzi, Benedetta, Repice, Anna Maria, Mariottini, Alice, Saccardi, Riccardo, Mazzanti, Benedetta, Massacesi, Luca, Ballerini, Clara
Publicado no Front Immunol (2020)

Benchmarking immunoinformatic tools for the analysis of antibody repertoire sequences

Por Smakaj, Erand, Babrak, Lmar, Ohlin, Mats, Shugay, Mikhail, Briney, Bryan, Tosoni, Deniz, Galli, Christopher, Grobelsek, Vendi, D’Angelo, Igor, Olson, Branden, Reddy, Sai, Greiff, Victor, Trück, Johannes, Marquez, Susanna, Lees, William, Miho, Enkelejda
Publicado no Bioinformatics (2020)

Chronic Viral Infection Promotes Efficient Germinal Center B Cell Responses

Por Fallet, Bénédict, Hao, Yi, Florova, Marianna, Cornille, Karen, de los Aires, Alba Verge, Girelli Zubani, Giulia, Ertuna, Yusuf I., Greiff, Victor, Menzel, Ulrike, Hammad, Karim, Merkler, Doron, Reddy, Sai T., Weill, Jean-Claude, Reynaud, Claude-Agnès, Pinschewer, Daniel D.
Publicado no Cell Rep (2020)

Resident memory CD8 T cells persist for years in human small intestine

Por Bartolomé-Casado, Raquel, Landsverk, Ole J.B., Chauhan, Sudhir Kumar, Richter, Lisa, Phung, Danh, Greiff, Victor, Risnes, Louise F., Yao, Ying, Neumann, Ralf S., Yaqub, Sheraz, Øyen, Ole, Horneland, Rune, Aandahl, Einar Martin, Paulsen, Vemund, Sollid, Ludvig M., Qiao, Shuo-Wang, Baekkevold, Espen S., Jahnsen, Frode L.
Publicado no J Exp Med (2019)

Single-cell BCR and transcriptome analysis after influenza infection reveals spatiotemporal dynamics of antigen-specific B cells

Por Mathew, Nimitha R., Jayanthan, Jayalal K., Smirnov, Ilya V., Robinson, Jonathan L., Axelsson, Hannes, Nakka, Sravya S., Emmanouilidi, Aikaterini, Czarnewski, Paulo, Yewdell, William T., Schön, Karin, Lebrero-Fernández, Cristina, Bernasconi, Valentina, Rodin, William, Harandi, Ali M., Lycke, Nils, Borcherding, Nicholas, Yewdell, Jonathan W., Greiff, Victor, Bemark, Mats, Angeletti, Davide
Publicado no Cell Rep (2021)

Inferred Allelic Variants of Immunoglobulin Receptor Genes: A System for Their Evaluation, Documentation, and Naming

Por Ohlin, Mats, Scheepers, Cathrine, Corcoran, Martin, Lees, William D., Busse, Christian E., Bagnara, Davide, Thörnqvist, Linnea, Bürckert, Jean-Philippe, Jackson, Katherine J. L., Ralph, Duncan, Schramm, Chaim A., Marthandan, Nishanth, Breden, Felix, Scott, Jamie, Matsen IV, Frederick A., Greiff, Victor, Yaari, Gur, Kleinstein, Steven H., Christley, Scott, Sherkow, Jacob S., Kossida, Sofia, Lefranc, Marie-Paule, van Zelm, Menno C., Watson, Corey T., Collins, Andrew M.
Publicado no Front Immunol (2019)

Discrete populations of isotype-switched memory B lymphocytes are maintained in murine spleen and bone marrow

Por Riedel, René, Addo, Richard, Ferreira-Gomes, Marta, Heinz, Gitta Anne, Heinrich, Frederik, Kummer, Jannis, Greiff, Victor, Schulz, Daniel, Klaeden, Cora, Cornelis, Rebecca, Menzel, Ulrike, Kröger, Stefan, Stervbo, Ulrik, Köhler, Ralf, Haftmann, Claudia, Kühnel, Silvia, Lehmann, Katrin, Maschmeyer, Patrick, McGrath, Mairi, Naundorf, Sandra, Hahne, Stefanie, Sercan-Alp, Özen, Siracusa, Francesco, Stefanowski, Jonathan, Weber, Melanie, Westendorf, Kerstin, Zimmermann, Jakob, Hauser, Anja E., Reddy, Sai T., Durek, Pawel, Chang, Hyun-Dong, Mashreghi, Mir-Farzin, Radbruch, Andreas
Publicado no Nat Commun (2020)

Methods and Applications of Computational Immunology

Publicado em 2020